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ProFITS of maize: a database of protein families involved in the transduction of signalling in the maize genome

Yi Ling, Zhou Du, Zhenhai Zhang and Zhen Su*

Author Affiliations

State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, PR China

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BMC Genomics 2010, 11:580  doi:10.1186/1471-2164-11-580

Published: 19 October 2010

Additional files

Additional file 1:

Classification rules in ProFITS. Detailed classification rules including a modified PPC criterion which is intended to gather all the protein-phosphorylation-related genes into one category.

Format: XLS Size: 36KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

Snapshot of JBrowse in ProFITS. In ProFITS, the text annotation and graphical exploration are interrelated to each other.

Format: JPEG Size: 126KB Download file

Open Data

Additional file 3:

GO enrichment analysis on Arabidopsis genes. The hierarchal GO graph of 1230 Arabidopsis genes involved in signal transduction are subjected to GO enrichment analysis using agriGO http://bioinfo.cau.edu.cn/agriGO/ webcite. The aspect of molecular function is presented here.

Format: JPEG Size: 620KB Download file

Open Data