Table 6

BLASTX hits to 11,472 Brugia malayi proteins

CAP3

CLC

MIRA

Newbler 2.3

Newbler 2.5

SeqMan


% of proteins hit

76.7

78.4

77.3

68.9*

77.9

78.6

(% of bases covered)

(60.4)

(62.4)

(59.7)

(51.8)*

(61.5)

(63.0)

% of protein hit by individual HSPs that cover 80% of target protein

27.0

26.0

26.5

29.2

32.4

28.7

(% of bases covered)

(16.8)

(16.1)

(16.4)

(19.9)

(22.3)

(18.0)


Note: E-value cutoff 1e-5

* indicates a value significantly lower than the others (p < 0.01), using a Huber M-estimator.

Kumar and Blaxter BMC Genomics 2010 11:571   doi:10.1186/1471-2164-11-571

Open Data