Table 11

Alignments to 11,472 B. malayi peptides using BLASTX (e value < 1e-5) where > 80% of the protein was covered by a match, by pairs of assemblies merged using an OLC assembler

Assembly Pair

% Peptides hit

% Peptide bases covered


CLC

Newbler 2.5

38.2

28.3

MIRA

Newbler 2.5

37.3

27.4

CLC

MIRA

37.1

27.1

CLC

Newbler 2.3

36.5

27.4

Newbler 2.5

SeqMan

36.5

26.8

CAP3

Newbler 2.5

36.4

26.9

CAP3

CLC

36.1

26.3

CLC

SeqMan

35.9

26.1

MIRA

SeqMan

35.7

25.7

Newbler 2.3

Newbler 2.5

35.3

26.3

CAP3

SeqMan

35.1

25.2

Newbler 2.3

SeqMan

34.4

25.6

CAP3

MIRA

34.0

24.2

CAP3

Newbler 2.3

34.0

25.1

MIRA

Newbler 2.3

33.3

24.0


Kumar and Blaxter BMC Genomics 2010 11:571   doi:10.1186/1471-2164-11-571

Open Data