Table 11 |
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|
Alignments to 11,472 B. malayi peptides using BLASTX (e value < 1e-5) where > 80% of the protein was covered by a match, by pairs of assemblies merged using an OLC assembler |
|||
|
Assembly Pair |
% Peptides hit |
% Peptide bases covered |
|
|
|
|||
|
CLC |
Newbler 2.5 |
38.2 |
28.3 |
|
MIRA |
Newbler 2.5 |
37.3 |
27.4 |
|
CLC |
MIRA |
37.1 |
27.1 |
|
CLC |
Newbler 2.3 |
36.5 |
27.4 |
|
Newbler 2.5 |
SeqMan |
36.5 |
26.8 |
|
CAP3 |
Newbler 2.5 |
36.4 |
26.9 |
|
CAP3 |
CLC |
36.1 |
26.3 |
|
CLC |
SeqMan |
35.9 |
26.1 |
|
MIRA |
SeqMan |
35.7 |
25.7 |
|
Newbler 2.3 |
Newbler 2.5 |
35.3 |
26.3 |
|
CAP3 |
SeqMan |
35.1 |
25.2 |
|
Newbler 2.3 |
SeqMan |
34.4 |
25.6 |
|
CAP3 |
MIRA |
34.0 |
24.2 |
|
CAP3 |
Newbler 2.3 |
34.0 |
25.1 |
|
MIRA |
Newbler 2.3 |
33.3 |
24.0 |
|
|
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|
Kumar and Blaxter BMC Genomics 2010 11:571 doi:10.1186/1471-2164-11-571 |
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