Table 4

Control bead-type summary
Quantity of starting RNA: 250 ng 100 ng 50 ng 10 ng
Negative controls detected in UHRR 37 32 20 0
Negative controls detected in Brain 35 40 29 24
Negative controls detected in all array-sections 10 6 2 0
Negative controls detected in at least one array-section 88 89 98 99
Negative controls: median log-intensity UHRR 5.78 5.79 5.73 5.58
Negative controls: median log-intensity Brain 5.80 5.82 5.72 5.58
Housekeeping controls: median log-intensity UHRR 13.46 13.14 13.09 11.32
Housekeeping controls: median log-intensity Brain 12.47 12.52 12.03 10.64

Giving a) the numbers of the 759 negative-control bead-types that show expression in one or more array-sections, and b) median log-intensities for negative-control and housekeeping bead-types in 100% UHRR and 100% Brain array-sections.

Lynch et al.

Lynch et al. BMC Genomics 2010 11:540   doi:10.1186/1471-2164-11-540

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