Table 1

Numbers of beads
Quantity of starting RNA: 250 ng 100 ng 50 ng 10 ng
Total decoded 18,801,235 17,835,076 17,926,750 19,274,434
Removed by BASH 200,459 408,721 284,088 50,449
Removed in summarization 651,323 614,495 603,619 582,345
Remaining 17,949,453 16,811,860 17,039,043 18,641,640
In analysis-group bead-types 7,963,638 7,475,940 7,563,440 8,248,259

Summing across all array-sections in the four experiments, we list the total numbers of beads (as decoded by Illumina), the numbers we remove as being in spatial artefacts using BASH [19], those removed as being outliers in the summarization, the remainders, and the numbers remaining that lie in the analysis-group of bead-types.

Lynch et al.

Lynch et al. BMC Genomics 2010 11:540   doi:10.1186/1471-2164-11-540

Open Data