Table 3

Candidate genes expressed in GO terms influencing the niche microenvironment, of stem/progenitor cells

LEC

Limbus

Cornea


Accession No

Gene Symbol

Accession No

Gene Symbol

Accession No

Gene Symbol


CAM


NM_022843

PCDH20 (1.9)

NM_002318

LOXL2 (2.5)

AL109804

SIGLEC1 (1.7)


AL109804

SIGLEC1 (1.8)

-

-

NM_022121

PERP (4.9)


NM_004360

CDH1 (3.1)

-

-

NM_002589

PCDH7 (3.2)


-

-

-

-

NM_004572

PKP2 (3.8)


Growth factors


-

-

NM_007083

NUDT6 (1.7)

NM_014624

S100A6 (5.7)


-

-

-

-

U62317

ECGF1 (2.7)


-

-

-

-

AC005234

TGFA (2.6)


-

-

-

-

NM_004494

HDGF (3.3)


Cytokines


-

-

NM_002350

LYN (1.2)

NM_199193

BRE (3.3)


-

-

-

-

NM_005625

SDCBP (2.4)


-

-

-

-

NM_021709

SIVA1 (3.8)


-

-

-

-

NM_017801

CMTM6 (3.9)


-

-

-

-

NM_004757

SCYE1 (7.9)


-

-

-

-

NM_016951

CKLF (3.9)


-

-

-

-

U52912

LEPR (3.5)


-

-

-

-

NM_000565

IL6R (8.7)


-

-

-

-

AJ271736

IL9R (4.2)


Antioxidants


NM_006406

PRDX4 (4.1)

NM_012094

PRDX5 (1.6)

NM_000454

SOD1 (3.9)


NM_000636

SOD2 (3.5)

NM_000636

SOD2 (1.6)

NM_000636

SOD2 (4.9)


-

-

-

-

NM_002574

PRDX1 (4.3)


-

-

-

-

NM_006793

PRDX3 (1.9)


-

-

-

-

NM_006406

PRDX4 (7.2)


-

-

-

-

NM_012094

PRDX5 (3.0)


-

-

-

-

NM_004528

MGST3 (3.7)


-

-

-

-

NM_018445

SELS (2.0)


-

-

-

-

NM_018833

TAP2 (2.9)


-

-

-

-

NM_000852

GSTP1 (3.7)


Neurotropins


NM_002615

SERPINF1(2.4)

NM_002615

SERPINF1(3.1)

AY029066

Humanin (4.3)


Immunomodulatory


AL109804

SIGLEC1 (1.8)

AL035662

CD40 (1.5)

AF098366

IGHG1 (5.6)


-

-

-

-

NM_030790

ITFG1 (4.4)


-

-

-

-

AL035662

CD40 (2.3)


Extracellular matrix


-

-

NM_002318

LOXL2 (2.5)

BC004241

LAMA4 (2.8)


Kulkarni et al. BMC Genomics 2010 11:526   doi:10.1186/1471-2164-11-526

Open Data