Table 5

Homoeolog-specific co-regulation of various functional groups of genes in allopolyploid wheat

MapMan BIN

MapMan functional classes

Genome

Expression

P value*


29

Protein biosynthesis

AB

up

6.7 × 10-3

1.3.1

Photosynthesis: calvin cycle, rubisco large subunit

AB

up

8.8 × 10-3

1.1

Photosynthesis: light reaction

AB

up

0.01

26.21

Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

AB

up

0.02

29.6

Protein folding

AB

up

0.05

29.2

Protein synthesis

D

down

2.1 × 10-5

29.2.1.2

Ribosomal protein synthesis

D

down

2.1 × 10-5

29.2.1

Protein synthesis, ribosomal proteins

D

down

3.2 × 10-5

29.2.1.2.2

Ribosomal protein synthesis 60S subunit

D

down

0.02


* P value is subjected to Benjamini and Hochberg (1995) correction for multiple test comparison

Akhunova et al. BMC Genomics 2010 11:505   doi:10.1186/1471-2164-11-505

Open Data