Table 6 |
||||
|
Summary of gene definition and probe remapping results using different gene definition methods |
||||
|
exlink |
exbd |
itbd |
overlap_0 |
|
|
|
||||
|
Gene definition |
||||
|
Number of transcripts in the database |
75,723 |
75,723 |
75,723 |
75,723 |
|
Number of genes defined by the method |
28,110 |
32,686 |
29,501 |
27,876 |
|
Probe remapping result |
||||
|
Probes having genome location issues |
60,662 |
60,662 |
60,662 |
60,662 |
|
Probes matching multiple genes |
1,487 |
10,672 |
4,360 |
974 |
|
Probes matching no gene |
65,443 |
65,443 |
65,443 |
65,443 |
|
< 3 probes per probe set |
4,378 |
3,992 |
4,234 |
4,402 |
|
Good Probes |
117,782 |
108,983 |
115,053 |
118,271 |
|
Percentage of Good Probes |
47.160% |
43.636% |
46.067% |
47.355% |
|
|
||||
|
Yin et al. BMC Genomics 2010 11:50 doi:10.1186/1471-2164-11-50 |
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