Table 1 |
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|
Number of transcripts and genes from each database and number of alignable genes and transcripts in the UCSC genome browser |
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|
Database |
No. of transcripts |
No. of genes |
No. of alignable transcripts |
No. of alignable genes |
|
|
||||
|
Single data source |
||||
|
GenBank |
59,527 |
36,843 |
25,336 |
14,130 |
|
RefSeq |
30,499 |
28,999 |
13,304 |
13,172 |
|
Ensembl |
35,967 |
25,546 |
35,967 |
25,546 |
|
Multiple data sources1 |
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|
ZFIN |
79,424 |
21,430 |
52,246 |
14,217 |
|
Biomart |
61,047 |
21,322 |
58,135 |
21,322 |
|
UCSC |
75,723 |
28,1102 |
75,723 |
28,110 |
|
|
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|
1: These databases integrate transcripts from Ensembl, RefSeq and GenBank databases. 2: Genes are defined by clustering transcripts overlapping in coding exons |
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|
Yin et al. BMC Genomics 2010 11:50 doi:10.1186/1471-2164-11-50 |
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