Table 1

Ratio of bona fide CGIs-exons (introns) overlap and "simulated" overlap average

Gene region

Bona fide overlap length/Simulated overlap average

"Simulated" CGIs

"Simulated" exons


3000 bp flank region

14.54

12.6


exon in 5' UTR

66.46

63.33


intron in 5' UTR (5' 200 bp)

30.36

26.49


intron in 5' UTR

2.35

2.2


intron in 5' UTR (3' 200 bp)

24.08

21.07


initial coding exon

39.32

35.4


initial intron in coding area (5' 200 bp)

24.16

21.77


initial intron in coding area

1.76

1.7


initial intron in coding area (3' 200 bp)

20.17

18.05


internal exon

7.15

14.87


internal intron (5' 200 bp)

1.81

3.25


internal intron

0.39

0.78


internal intron (3' 200 bp)

1.55

2.83


terminal coding exon

13.01

11.75


terminal intron in coding area (5' 200 bp)

3.51

3.22


terminal intron in coding area

0.64

0.62


terminal intron in coding area (3' 200 bp)

3.05

2.77


exon in 3' UTR

1.93

1.82


intron in 3' UTR (5' 200 bp)

3.99

3.26


intron in 3' UTR

0.61

2.25


intron in 3' UTR (3' 200 bp)

2.8

0.56


The total length of CGI overlapping with exons and introns in different gene regions normalized for the expectation estimated from overlapping of randomly sampled intervals.

Medvedeva et al. BMC Genomics 2010 11:48   doi:10.1186/1471-2164-11-48

Open Data