Table 4

Enzymes related to oil accumulation and breakdown in seeds

Symbol

Enzyme

Unisequences

NJD

NJG


Fatty Acid Biosynthesis


FatA

Acyl-ACP thioesterase A

2

25.95

0

FatB

Acyl-ACP thioesterase B

1

1.36

0

ACC

Acetyl-CoA carboxylase

4

10.91

0

EAR

Enoyl-ACP reductase

2

2.72

1.68

HAD

Hydroxyacyl-ACP dehydrase

0

0

0

KAR

Ketoacyl-ACP reductase

5

16.36

1.68

KAS I

Ketoacyl-ACP synthase I

4

9.54

0

KAS II

Ketoacyl-ACP synthase II

2

5.45

1.68

KAS III

Ketoacyl-ACP synthase III

0

0

0

MAT

Malonyl-CoA ACP transacyclase

1

1.36

0

FAD2

Oleoyl-ACP desaturase

2

9.55

8.43

PCH

Palmitoyl-CoA hydrolase

1

0

1.68

SAD

Stearoyl-ACP desaturase

1

1.36

0


Triacylglycerol Biosynthesis


LAT

1-Acylglycerol-3-phosphate-O-acyltransferase

1

1.36

0

DGAT

Acyl-CoA:diacylglycerol acyltransferase

2

1.36

1.68

GPAT

Glycerol-3-phosphate acyltransferase

1

1.36

0

PDAT

Phospholipid:diacylglycerol acyltransferase

1

0

1.68

PP

Phosphotidate phosphatase

0

0

0

OLE

Oleosin

2

4.09

0


Triacylglycerol Degradation


ML

Monoacylglycerol lipase

1

1.36

0

PLAS

Peroxysomal long-chain acyl-CoA synthetase

5

2.72

21.86

PFAT

Peroxisomal fatty acid/acyl-CoA transporter

0

0

0

TL

Triacylglycerol lipase

14

21.82

40.45


Fatty Acid Degradation


FADA

Acetyl-CoA acyltransferase

6

8.19

106.14

ATOB

Acetyl-CoA C-acetyltransferase

2

1.36

1.68

ADH

Alcohol dehydrogenase

1

2.72

1.68

ACADM

Acyl-CoA dehydrogenase

2

0

6.74

ACOX

Acyl-CoA oxidase

4

4.09

10.1

ALDH3A2

Aldehyde dehydrogenase (NAD+)

4

8.19

15.17

DCR

Dienoyl-CoA reductase

5

2.72

18.46

PAAG

Enoyl-CoA hydratase

12

9.53

47.19

ACSL

Long-chain acyl-CoA synthetase

4

2.72

3.36


Number of unisequences assigned to enzymes of metabolic pathways related to oil accumulation and breakdown in the seeds. NJD shows the number of ESTs in JD normalised to 10,000 reads. NJG shows the number of ESTs in JG normalised to 10,000 reads. See additional file 4 for the unisequence names and AC statistics.

Costa et al. BMC Genomics 2010 11:462   doi:10.1186/1471-2164-11-462

Open Data