Table 4

Detailed description of genes and unassigned regions (UR) within the complete mt genome (15078 bp) of Eualetes tulipa

Gene

Starta

End

Length

Amino acids

Start codon

End codonb

UR (%AT)c


cox1

1

1531

1531

510

ATG

T--

0

trnD

1532

1596

65

-

-

-

0

atp8

1597

1752

156

49

ATG

TAG

-7

atp6

1746

2430

685

228

ATG

T--

0

trnN

2431

2497

67

-

-

-

0

nad5

2498

4205

1708

569

ATG

T--

0

trnK

4206

4270

65

-

-

-

51 (62.1)

cox3

4322

5104

783

261

ATG

TAA

0

trnSAGN

5105

5168

64

-

-

-

0

nad2

5169

6176

1008

336

ATG

TAA

0

trnR

6177

6242

66

-

-

-

4

trnT

6247

6312

66

-

-

-

33 (66.7)

trnY*

6346

6411

66

-

-

-

2

trnM*

6414

6480

67

-

-

-

0

trnC*

6481

6546

66

-

-

-

0

trnW*

6547

6609

63

-

-

-

-5

trnQ*

6605

6671

67

-

-

-

0

trnG*

6672

6735

64

-

-

-

6

trnE*

6742

6807

66

-

-

-

0

rrnS

6808

7716

909

-

-

-

0

trnV

7717

7783

67

-

-

-

0

rrnL

7784

9087

1304

-

-

-

0

trnLCUN

9088

9152

65

-

-

-

9

trnP

9162

9225

64

-

-

-

73 (71.2)

nad1

9299

10231

933

311

ATA

TAG

10 (50.0)

trnA

10242

10304

63

-

-

-

2

trnLUUR

10307

10371

65

-

-

-

56 (58.9)

nad6

10428

10934

507

169

ATG

TAG

2

cob

10937

12076

1140

380

ATG

TAG

0

trnSUCN

12077

12143

67

-

-

-

18 (66.7)

nad4L

12162

12452

291

97

ATG

TAG

-7

nad4

12446

13810

1365

455

ATG

TAG

-1

trnH

13810

13875

66

-

-

-

-1

trnF

13875

13940

66

-

-

-

0

trnI

13941

14012

72

-

-

-

0

nad3

14013

14366

354

118

ATG

TAG

3

cox2

14370

15058

689

229

ATG

TA-

20 (65.0)


a Genes are arranged relative to cox1. Those encoded on the "-" strand are indicated with an asterisk (*).

b T, and TA, refer to instances where incomplete stop codons are inferred.

c Unassigned regions are identified by positive values. Negative values indicate overlap between adjacent genes. Values in brackets refer to %AT of the associated UR (only those UR >10 bp in length were analyzed).

Rawlings et al. BMC Genomics 2010 11:440   doi:10.1186/1471-2164-11-440

Open Data