Table 2

Detailed description of genes and unassigned regions (UR) within the complete mt genome (15578 bp) of Dendropoma maximum

Gene

Starta

End

Length

Amino acids

Start codon

End codonb

UR (%AT)c


cox1

1

1536

1536

512

ATG

TAG

38 (76.3)

trnD

1575

1642

68

-

-

-

0

atp8

1643

1798

156

52

ATG

TAG

-7

atp6

1792

2479

688

229

ATG

T--

0

trnN

2480

2550

71

-

-

-

0

nad5

2551

4251

1701

567

ATG

TAA

14 (78.6)

trnK

4266

4340

75

-

-

-

-2

trnA

4339

4404

66

-

-

-

1

cox3

4406

5185

780

260

ATG

TAA

15 (86.7)

trnSAGN

5201

5274

74

-

-

-

1

nad2

5276

6295

1020

340

ATG

TAG

0

trnR

6296

6364

69

-

-

-

11 (54.5)/167 (69.3)d

rrnS* (pseudo)

6376

6496

121

-

-

-

35 (74.3)

trnY*

6532

6598

67

-

-

-

0

trnM*

6599

6668

70

-

-

-

2

trnC*

6671

6739

69

-

-

-

0

trnW*

6740

6807

68

-

-

-

-4

trnQ*

6804

6874

71

-

-

-

0

trnG*

6875

6943

69

-

-

-

0

trnE*

6944

7016

73

-

-

-

0

rrnS

7017

8049

1033

-

-

-

0

trnV

8050

8116

67

-

-

-

0

rrnL

8117

9563

1447

-

-

-

0

trnLUUR

9564

9633

70

-

-

-

-4

trnLCUN

9630

9698

69

-

-

-

1

nad1

9700

10632

933

311

ATG

TAA

2

trnP

10635

10707

73

-

-

-

1

nad6

10709

11189

481

160

ATG

T--

0

cob

11190

12329

1140

380

ATG

TAG

2

trnSUCN

12332

12399

68

-

-

-

33 (54.5)

trnT*

12433

12508

76

-

-

-

8

nad4L

12517

12810

294

98

ATG

TAG

-7

nad4

12804

14161

1358

452

GTG

TA-

0

trnH

14162

14231

70

-

-

-

46 (47.8)

trnF

14278

14346

69

-

-

-

0

trnI

14347

14418

72

-

-

-

2

nad3

14421

14774

354

118

ATG

TAG

46 (65.2)

cox2

14821

15498

678

226

ATG

TAG

80 (63.8)


a Genes are arranged relative to cox1. Those encoded on the "-" strand are indicated with an asterisk (*).

b T, and TA, refer to instances where incomplete stop codons are inferred.

c Unassigned regions are identified by positive values. Negative values indicate overlap between adjacent genes. Values in brackets refer to %AT of the associated UR (only those UR >10 bp in length were analyzed).

d For the unassigned region between trnR and trnY spanning the pseudogene rrnS.

Rawlings et al. BMC Genomics 2010 11:440   doi:10.1186/1471-2164-11-440

Open Data