Table 2

Correlation between REP numbers and presence or absence of their cognate RAYTs in different bacterial strains

REP symbol


Host strain

Pput1

Pput2

Pput3

Pput4

Pflu1

Pflu2

Pflu3

Xaxo

Xcam

Smal1

Smal2

Smal3

Smal4

S_sp1

S_sp2


Pseudomonas putida KT2440

    62

    35

4

3

    21

    27

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0


Pseudomonas putida F1

    70

    30

4

4

    56

    78

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0


Pseudomonas putida GB-1

16

4

    62

    14

4

23

6

63

0

0

0

0

0

0

0

0

0

0

0

0

0


Pseudomonas putida W619

0

0

1

1

0

0

    24

    77

0

0

0

0

0

0

0

0

0

0

0

0

0


Pseudomonas fluorescens SBW25

0

0

0

0

0

0

0

0

    387

    104

    83

    119

0

0

0

0

0

0

0

0

0


Pseudomonas fluorescens Pf0-1

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0


Pseudomonas fluorescens Pf-5

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

0

0

0

0

0

0


Xanthomonas axonopodis pv. citri str. 306

0

0

0

0

0

0

0

0

0

0

0

0

    9

    23

0

0

0

0

0

0

0


Xanthomonas. campestris pv. vesicatoria str. 85-10

0

0

0

0

0

0

0

0

0

0

0

0

    7

    11

1

0

0

0

0

0

0


Xanthomonas campestris pv. campestris str. 8004

0

0

0

0

0

0

0

0

0

0

0

0

0

3

    43

0

0

0

0

0

0


Xanthomonas. campestris pv. campestris str. ATCC 33913

0

0

0

0

0

0

0

0

0

0

0

0

1

3

    48

0

0

0

0

0

0


Xanthomonas campestris pv. campestris str. B100

0

0

0

0

0

0

0

0

0

0

0

0

2

4

    49

0

0

0

0

0

0


Stenotrophomonas maltophilia R551-3

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

49

    259

    39

266

25

4


Stenotrophomonas maltophilia K279a

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

7

13

    52

    427

47

16


Stenotrophomonas sp. SKA14

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

3

7

7

    323

    69

    37


The values represent the numbers of exact copies of REP sequences, flanking identified rayt genes (as denoted in Table 1), in bacterial genomes. For dimorphic REPs, the upper value corresponds to the number of upper REP sequences from Table 1 and vice versa. In cases where the cognate rayt gene or its close homolog (flanked by the same REPs) is actually present in the given genome, the numbers are written in bold and underlined.

Nunvar et al. BMC Genomics 2010 11:44   doi:10.1186/1471-2164-11-44

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