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Open Access Research article

LTR retroelements in the genome of Daphnia pulex

Mina Rho1, Sarah Schaack2, Xiang Gao3, Sun Kim14, Michael Lynch3 and Haixu Tang14*

Author Affiliations

1 School of Informatics and Computing, Indiana University, Bloomington, IN 47405, USA

2 Department of Biology, University of Texas-Arlington, Arlington, TX 76019, USA

3 Department of Biology, Indiana University, Bloomington, IN 47405, USA

4 Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405, USA

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BMC Genomics 2010, 11:425  doi:10.1186/1471-2164-11-425

Published: 9 July 2010

Additional files

Additional file 1:

The file includes four tables. Table S1. Intact LTR retroelements in the D. pulex genome. Table S2. Summary of intact LTR retroelements in five genomes. Table S3. Summary of TEs transcribed under three different conditions. Table S4. A list of LTR retroelements expressed in tiling array data. Table S5. A list of tiling array information collected ENCODE website Table S6: A list of RT sequences in Figure 1.

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