Table 3

Pairwise linkage disequilibrium (r2) for syntetic SNPs at various distanced pooled over X-specific and pseudo-autosomal (PAR) regions of the X chromosome

Distance

X-specific

Pseudo-autosomal



N

Mean

SD

N

Mean

SD


0-40 kb

126

0.28

0.28

24

0.15

0.18

40-60 kb

106

0.23

0.26

18

0.08

0.10

60-100 kb

197

0.18

0.24

32

0.10

0.14

100-200 kb

461

0.11

0.17

89

0.05

0.07

200-500 kb

1,184

0.08

0.13

262

0.06

0.07

0.5-1 Mb

1,755

0.06

0.09

361

0.04

0.05

1-2 Mb

3,144

0.05

0.07

584

0.03

0.04

2-5 Mb

8,903

0.04

0.06

-

-

-

5-10 Mb

13,678

0.04

0.05

-

-

-

10-20 Mb

23,588

0.03

0.04

-

-

-

20-50 Mb

46,808

0.02

0.03

-

-

-

50-100 Mb

59,598

0.01

0.01

-

-

-

> 100 Mb

36,703

0.01

0.01

-

-

-


Bohmanova et al. BMC Genomics 2010 11:421   doi:10.1186/1471-2164-11-421

Open Data