Table 2

Pairwise linkage disequilibrium (|D'|) of syntenic SNPs at various distanced pooled over all autosomes

Distance

N

Mean

SD

Median

95% CI of the Mean

% Strong LD*


0-40 kb

16,237

0.76

0.31

0.94

0.76

0.77

62

40-60 kb

12,683

0.72

0.32

0.88

0.71

0.72

53

60-100 kb

25,527

0.67

0.33

0.78

0.66

0.67

43

100-200 kb

62,422

0.62

0.33

0.67

0.61

0.62

33

200-500 kb

183,089

0.56

0.32

0.58

0.56

0.56

24

0.5-1 Mb

299,167

0.52

0.31

0.52

0.52

0.52

19

1-2 Mb

583,426

0.48

0.30

0.46

0.48

0.48

14

2-5 Mb

1,671,022

0.41

0.28

0.38

0.41

0.41

8

5-10 Mb

2,584,922

0.33

0.24

0.28

0.33

0.33

3

10-20 Mb

4,615,064

0.24

0.19

0.19

0.24

0.24

1

20-50 Mb

9,971,401

0.15

0.14

0.11

0.14

0.14

0

50-100 Mb

6,658,292

0.10

0.10

0.07

0.10

0.10

0

> 100 Mb

988,416

0.09

0.09

0.06

0.09

0.09

0


*Percentage of pairs of SNPs with |D'| > 0.8

Bohmanova et al. BMC Genomics 2010 11:421   doi:10.1186/1471-2164-11-421

Open Data