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Open Access Research article

Characteristics of linkage disequilibrium in North American Holsteins

Jarmila Bohmanova1*, Mehdi Sargolzaei2 and Flavio S Schenkel1

Author Affiliations

1 Centre for Genetic Improvement of Livestock, Animal and Poultry Science, Department, University of Guelph, Guelph, Ontario, Canada

2 L'Alliance Boviteq, Saint-Hyacinthe, Québec, Canada

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BMC Genomics 2010, 11:421  doi:10.1186/1471-2164-11-421

Published: 8 July 2010

Additional files

Additional file 1:

Frequency distribution of minor allele frequency of all SNPs before editing.

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Open Data

Additional file 2:

Frequency distribution of distance between adjacent SNPs located on autosomes.

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Additional file 3:

Frequency distribution of distance between adjacent SNPs located on the chromosome X.

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Additional file 4:

Decay of linkage disequilibrium (r2) with distance of misplaced SNPs (before and after correcting SNP location). The titles indicate chromosome number, name and physical location of the misplaced SNP. The even figures represent a decline of LD when location of the misplaced SNP was corrected.

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Open Data