Table 3

Three common repeats were assembled from a pool of 21 million WGS reads representing 3.9% of the P. taeda genome.

No. reads

TPE1/copia

PtIFG7

cen-rpt

tel-rpt*


No. WGS reads

2100000

330219

281712

57524

50494

Est. genome portion

3.5%

1.57%

1.34%

0.27%

0.24%

Total base pairs

87,000,000

350000000

300000000

60000000

53000000

Est. element length

--

4200

4000

50

7

Est. copies in genome

--

82000

74000

--

--

Ave. no./chromosome

--

6900

6100

--

--

Ave. bp/chromosome

36000000

29200000

25000000

2500000

22000000


*Also reported are the results of a separate assay of the WGS reads for similarity to the consensus plant telomeric tandem repeat (tel-rpt; TTTAGGG).

Kovach et al. BMC Genomics 2010 11:420   doi:10.1186/1471-2164-11-420

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