Table 1

Distribution of sRNA matches between transposable elements and genes in three annotated genomic regions

Total

Transposable elements

Genes


Region

Organism

Length (bp)

sRNA counts

sRNA counts/bp

Length (bp)

sRNA counts

sRNA counts/bp

Length (bp)

sRNA counts

sRNA counts/bp


EU835198

T. turgidum

314,057

71,868

0.23

220,511

70,808

0.32

18,298

8

0.00

DQ871219

T. turgidum

245,486

43,789

0.18

144,831

37,374

0.26

15,324

59 *

0.00

EF540321

T. turgidum

291,163

43,074

0.15

131,089

38,216

0.29

16,412

13

0.00

EF567062

T. aestivum

137,614

17,447

0.13

83,355

17,008

0.20

14,335

30

0.00

DQ537335

T. aestivum

292,102

41,761

0.14

231,351

39,091

0.17

11,096

32

0.00


* 54 of these match to a single gene annotated as a predicted leucine rich repeat gene.

Cantu et al. BMC Genomics 2010 11:408   doi:10.1186/1471-2164-11-408

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