Table 2

SNP counts and bases per SNP

    SNP Counts

    Bases per SNP

Chromosome

Non-N Bases

A

B

C

A

B

C


chrA1

164,170,763

77,824

151,421

240,266

2,110

1,084

683

chrA2

120,172,290

59,782

118,896

180,685

2,010

1,011

665

chrA3

109,094,838

55,010

110,129

192,266

1,983

991

567

chrB1

131,184,541

62,260

118,189

196,456

2,107

1,110

668

chrB2

101,553,943

49,898

95,152

161,014

2,035

1,067

631

chrB3

96,970,780

47,679

93,489

167,719

2,034

1,037

578

chrB4

108,425,265

53,709

104,123

170,033

2,019

1,041

638

chrC1

160,223,031

76,483

147,928

245,762

2,095

1,083

652

chrC2

107,198,630

53,479

98,226

163,338

2,004

1,091

656

chrD1

81,705,395

45,881

88,125

130,989

1,781

927

624

chrD2

67,243,459

37,877

71,535

134,493

1,775

940

500

chrD3

71,434,721

40,297

79,074

119,894

1,773

903

596

chrD4

67,338,148

34,295

65,034

88,513

1,963

1,035

761

chrE1

44,074,055

24,513

50,193

87,236

1,798

878

505

chrE2

50,431,338

27,836

56,317

94,520

1,812

895

534

chrE3

36,523,145

24,444

47,449

68,476

1,494

770

533

chrF1

45,373,584

24,292

45,507

83,877

1,868

997

541

chrF2

56,475,142

29,011

55,998

93,247

1,947

1,009

606

chrX

83,845,181

19,431

32,619

65,352

4,315

2,570

1,283

chrUnCf

217,904,849

101,325

198,166

323,505

2,151

1,100

674

chrUn

70,839,159

18,959

34,246

70,797

3,736

2,069

1,001


Total

1,992,182,257

964,285

1,861,816

3,078,438

2,066

1,070

647


A

SNPs excluding Cinnamon and Nancy

B

SNPs excluding Cinnamon

C

All SNPs


Mullikin et al. BMC Genomics 2010 11:406   doi:10.1186/1471-2164-11-406

Open Data