Table 3

contigs identified to flank or contain gene sequences of interest.

Gene name

Closest Contigs


Cotton fiber genes

Closest Genetic Markers


Li2

A1552, Gate4BC11

ctg1749, ctg2409

Li1

Gate4CA09, Coau1J04

ctg478, ctg8796, ctg10964, ctg11826

N1/Fbl

Gafb28I12, pAR0244, Gafb29C08

ctg11567, ctg3941, ctg5857, ctg 497, ctg1153, ctg1422, ctg1955, ctg2775, ctg3754, ctg8492, ctg11632, ctg93, ctg4489, ctg12050, ctg10883, ctg7872


Other genes and gene families

Probes


CesA

COV2311, COV2312, COV1269, COV1270

ctg10763, ctg10561, ctg10858, ctg12310, ctg228

GTPB

COV2309, COV2310

ctg11814, ctg483, ctg669

AdhA

COV1992, COV1993, COV1265, COV1266

ctg10740, ctg11096, ctg11218, ctg11323, ctg12283

AdhC

COV1267

ctg1376

AdhD

COV1924, COV1925

ctg1376, ctg159


Arabidopsis trichome genes


TUA6

-

ctg1653, ctg3177

TTG2

COV1942

ctg937

ACT2

COV1933

ctg908

GL2

-

ctg601

FRA1

COV1932

ctg6359, ctg1785, ctg59

FRA2

COV1940

ctg1009, ctg11648

GL3

COV1945

ctg686, ctg2610

GL1

COV1950

ctg9085, ctg11801

TRY

COV1936

ctg471, ctg3808

SPIKE1

COV1937

ctg10915, ctg157, ctg627


Lin et al. BMC Genomics 2010 11:395   doi:10.1186/1471-2164-11-395

Open Data