Table 1

The genes whose expression profiles have been significantly modified by the change of experimental factors

Gene ID

Accession #

p.value

Log(FC)

Homologue


Factor A (Temperature)

BG17_C09*

AM230384

7.00E-05

0.628

N/A

BG27_B08*

AM230019

0.00043

0.332

AAT92111.1| Excretory gland peptide NPL-2 [Ixodes pacificus]

BG28_H05*

AM229934

0.0052

-0.322

BAE93436.1| Shematrin-4 [Pinctada fucata]

BG03_B01*

AM229901

0.00653

-0.196

AAV80789.1| Excretory gland peptide [Ixodes scapularis]

BG23_D02*

AM229752

0.0068

-0.190

AAV80789.1| Excretory gland peptide [Ixodes scapularis]

Factor B (Water agitation)

BG29_B09*

AM230251

0.00415

0.232

N/A

BG22_H06*

AM229789

0.00952

-0.156

N/A

Factor C (Dissolved oxygen)

BG23_D06*

AM230109

0.0026

-0.270

N/A

BG14_F09*

AM230247

0.00639

0.16

N/A

Factor D (Attachment status)

BG17_G02*

AM230231

0.00011

-0.6

N/A

BG10_C05*

AM229883

0.00114

0.146

AAV80789.1| Excretory salivary gland peptide [Ixodes scapularis]

BG33_H03*

AM230185

0.0013

-0.168

N/A

BG97/192_B06*

AM230076

0.00317

0.214

AAS92593.1| Excretory/secretory protein Juv-p120 precursor [Litomosoides sigmodontis]

BG20_F04*

AM230089

0.00339

-0.122

N/A

BG13_F10*

AM230013

0.00374

-0.130

AAV80789.1| Excretory gland peptide [Ixodes scapularis]

BG23_B03*

AM229897

0.00498

-0.184

AAV80789.1| Excretory gland peptide [Ixodes scapularis]

BG14_A11*

AM230170

0.00523

0.272

ABI52762.1| 60S ribosomal protein L27 [Argas monolakensis]

BG16_D03*

AM230168

0.00801

0.168

AAN05585.1| Ribosomal protein L22 [Argopecten irradians]

BG13_C11*

AM230205

0.00946

-0.124

N/A


When Log (FC) > 0,

In Factor A: the gene is up-regulated when water temperature is decreased;

In Factor B: the gene is upregulated when the mussel is under agitation;

In Factor C: the gene is upregulated when dissolved oxygen in water is at lower level;

In Factor D: the gene is upregulated when the mussel is under attachment.

Xu and Faisal BMC Genomics 2010 11:341   doi:10.1186/1471-2164-11-341

Open Data