Table 1

Most significant SNP associations detected by case/control analysis.

Marker name

Chr

Marker position (bp)

MAF (cases)

MAF (controls)

Chi-square value

P-value


BTB-01162852

4

115,699,819

1

0

32.00

1.54E-08

ARS-BFGL-NGS-24470

4

115,725,375

1

0.05556

28.21

1.09E-07

ARS-BFGL-NGS-43056

4

116,685,970

1

0.05556

28.21

1.09E-07

ARS-BFGL-NGS-80140

4

117,048,104

1

0.05556

28.21

1.09E-07

ARS-BFGL-NGS-108296

4

119,189,609

1

0.05556

28.21

1.09E-07

ARS-BFGL-NGS-95252

4

119,272,013

1

0.05556

28.21

1.09E-07


"Chr" indicates the Bos taurus chromosome (BTA) number. "MAF" denotes the minor allele frequency, and is individually reported for case (affected) individuals and control (normal) individuals. The chi-square is the result of a basic allele test, with one degree of freedom (df). P-value is the asymptotic p-value for the basic allele test.

Meyers et al. BMC Genomics 2010 11:337   doi:10.1186/1471-2164-11-337

Open Data