Table 1

Summary of platforms

Authors

Strains/Culture

Platform

Detection strategy

Number/Resolution


Lee et al.

BY4741/in YPD

Affymetrix

HMM

70,871/4 bp

Albert et al.

BY4741/in rich media

Pyrosequencing

Chip-Seq Length:~25 bp

~10,000/~4 bp

Whitehouse et al.

S288C/in C media

Affymetrix

Iteratively fitting

WT:58,275/~5 bp

M:62,594/~5 bp

Shivaswamy et al.

S288C/in rich media

Solexa Ultra-high-throughput sequencing

Chip-Seq

N:49,043/~1 bp

Length:~25 bp

H:52,817/~1 bp

Mavrich et al.

BY4741/YPD

The Roche GS20

Chip-Seq

54,753/~1 bp

454 Life Sciences

Length > 100 bp

Field et al.

BY4741/in YPD

454 pyrosequencing

Chip-Seq

43,720~44,134/~1 bp

parallel sequencing

Length:~200 bp


The normal condition is denoted by N, and the heat shock condition is denoted by H. The isw2 mutation strains and wild-type strains are separately represented by M and WT. Numbers in the fifth column represent the total nucleosome counts detected in each experiment and data resolution, respectively.

Feng et al. BMC Genomics 2010 11:33   doi:10.1186/1471-2164-11-33

Open Data