Table 4

Prediction of unmethylated regions (Weber's regions, N = 13,277).

Method

Number of predicted islands

Number of islands overlapping a Weber's region

Number of Weber's regions 'touched' by the prediction

SN

PPV


TJ

37,293

10,179

9,965

0.755

0.273


UCSC

27,639

9,788

9,552

0.724

0.354


CpGproD

76,886

10,320

10,257

0.774

0.134


CpGcluster:


relaxed set*

198,702

18,967

10,372

0.867

0.095


strict set**

25,454

9,633

8,378

0.663

0.378


*p-value ≤ 1E-5; ** p-value ≤ 1E-20

Hackenberg et al. BMC Genomics 2010 11:327   doi:10.1186/1471-2164-11-327

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