Table 4 |
|||||
|
Prediction of unmethylated regions (Weber's regions, N = 13,277). |
|||||
|
Method |
Number of predicted islands |
Number of islands overlapping a Weber's region |
Number of Weber's regions 'touched' by the prediction |
SN |
PPV |
|
|
|||||
|
TJ |
37,293 |
10,179 |
9,965 |
0.755 |
0.273 |
|
|
|||||
|
UCSC |
27,639 |
9,788 |
9,552 |
0.724 |
0.354 |
|
|
|||||
|
CpGproD |
76,886 |
10,320 |
10,257 |
0.774 |
0.134 |
|
|
|||||
|
CpGcluster: |
|||||
|
|
|||||
|
relaxed set* |
198,702 |
18,967 |
10,372 |
0.867 |
0.095 |
|
|
|||||
|
strict set** |
25,454 |
9,633 |
8,378 |
0.663 |
0.378 |
|
|
|||||
|
*p-value ≤ 1E-5; ** p-value ≤ 1E-20 |
|||||
|
Hackenberg et al. BMC Genomics 2010 11:327 doi:10.1186/1471-2164-11-327 |
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