Table 3

Prediction of unmethylated regions (Bird's islands, N = 17,383).

Method

Number of predicted islands

Number of islands overlapping a Bird's island

Number of Bird's islands 'touched' by the prediction

SN

PPV


TJ

37,293

14,315

14,942

0.854

0.384


UCSC

27,639

13,858

14,256

0.816

0.501


CpGproD

76,886

14,250

15,346

0.875

0.185


CpGcluster:


relaxed set*

198,702

29,235

15,497

0.939

0.147


strict set**

25,454

14,809

12,623

0.757

0.582


*p-value ≤ 1E-5; **p-value ≤ 1E-20

Hackenberg et al. BMC Genomics 2010 11:327   doi:10.1186/1471-2164-11-327

Open Data