Table 2

Components in the initial network model

Source Synonym

Source Symbol

Target Synonym

Operon

DA1 Score

Organism


b3404

EnvZ

SYNW0807

SYNW0807-0808

1

E. coli

b3405

OmpR

SYNW0808

SYNW0807-0808

0.99

E. coli

sll0689

NhaS3

SYNW0157

0.99

PCC6803

sll0493

KtrA

SYNW2169

SYNW2165-2170

0.56

PCC6803

slr1509

KtrB

SYNW2168

SYNW2165-2170

0.99

PCC6803

slr1508

KtrE

SYNW0663

SYNW0663-0667

0.99

PCC6803

b2741

σ38

SYNW1621

1

E. coli

sll0306

RpoD

SYNW0102

SYNW0101-0102

1

PCC6803

b0312

BetB

SYNW1956

0.99

E. coli

b0314

BetT

SYNW0229

SYNW0229-0233

0.99

E. coli

b4111

ProP

SYNW2494

SYNW2494-2495

E. coli

b2677

ProV

SYNW1915

SYNW1915-1917

0.56

E. coli

b2678

ProW

SYNW1916

SYNW1915-1917

0.99

E. coli

b2679

ProX

SYNW1917

SYNW1915-1917

0.99

E. coli

AB094497

GsmT

SYNW1914

PCC7418

AB094498

SdmT

SYNW1913

PCC7418

sll1566

GgpS

SYNW1281

SYNW1279-1286

0.99

PCC6803

slr0746

GgpP

SYNW0860

PCC6803

slr0747

GgtA

SYNW1285

SYNW1279-1286

0.99

PCC6803

slr0530

GgtC

SYNW1283

SYNW1279-1286

0.99

PCC6803

slr0531

GgtD

SYNW1284

SYNW1279-1286

0.99

PCC6803

ABX75857

GpgS

SYNW2436

P.marina

ABX75858

GpgP

SYNW2434

P.marina

slr0662

SpeA

SYNW2359

0.99

PCC6803

sll0045

Sps

SYNW2520

0.69

PCC6803

b0855

PotG

SYNW1544

0.99

E. coli

YP_225044

MtrA

SYNW2246

C. glut

YP_225045

MtrB

SYNW0551

C. glut


1. DA: domain architecture

Mao et al. BMC Genomics 2010 11:291   doi:10.1186/1471-2164-11-291

Open Data