Table 1 |
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|
Components in the template models |
|||
|
Organism |
Gene |
Symbol |
Function |
|
|
|||
|
AB094497 |
GsmT |
Betaine synthetases with glycine as the |
|
|
A. halo |
AB094498 |
SdmT |
substrate |
|
|
|||
|
BAB69459 |
apNhaP |
Na+/H+ antiporter |
|
|
|
|||
|
cg1016 |
BetP |
Betaine transporter |
|
|
|
|||
|
C. glut |
cg0864 |
MtrB |
Two-component system that senses osmotic |
|
cg0862 |
MtrA |
stress |
|
|
|
|||
|
b0019 |
NhaA |
Na+ antiporter |
|
|
b1186 |
NhaB |
||
|
|
|||
|
b0020 |
NhaR |
Na+/H+ antiporter regulator |
|
|
|
|||
|
b3290 |
TrkA |
Predominant K+ channel |
|
|
b1291 |
TrkE |
||
|
b1363 |
TrkG |
||
|
b3893 |
TrkH |
||
|
|
|||
|
b3747 |
Kup |
K+ channel playing a major role in neutral or slightly alkaline environments |
|
|
|
|||
|
b0698 |
KdpA |
High-affinity K+ channel playing a major role |
|
|
b0697 |
KdpB |
under osmotic stress |
|
|
b0696 |
KdpC |
||
|
b4513 |
KdpF |
||
|
|
|||
|
b0694 |
KdpE |
Two component system activating Kdp |
|
|
E. coli |
b0695 |
KdpD |
expression under osmotic stress |
|
|
|||
|
b0311 |
BetA |
Betaine synthetases with proline as the |
|
|
b0312 |
BetB |
substrate |
|
|
|
|||
|
b0314 |
BetT |
Proline transporter |
|
|
|
|||
|
b1896 |
OtsA |
Trehalose synthetases with UDPG as the |
|
|
b1897 |
OtsB |
substrate |
|
|
|
|||
|
b2677 |
ProV |
Betaine/proline transporter |
|
|
b2678 |
ProW |
||
|
b2679 |
ProX |
||
|
|
|||
|
b2938 |
SpeA |
Arginine synthetase |
|
|
|
|||
|
b3404 |
EnvZ |
Two-component system regulating OmpC and |
|
|
b3405 |
OmpR |
OmpF under osmotic stress |
|
|
|
|||
|
b0929 |
OmpF |
Porin-encoding genes |
|
|
b2215 |
OmpC |
||
|
|
|||
|
b4111 |
ProP |
Betaine/proline transporter |
|
|
|
|||
|
b2741 |
σ38 |
RNA polymerase, Sigma 38 (Sigma S) factor |
|
|
|
|||
|
b1126 |
PotA |
Putrescine/spermidine transporter |
|
|
b1125 |
PotB |
||
|
b1124 |
PotC |
||
|
b1123 |
PotD |
||
|
|
|||
|
b0854 |
PotF |
Putrescine transporter |
|
|
b0855 |
PotG |
||
|
b0856 |
PotH |
||
|
b0857 |
PotI |
||
|
|
|||
|
P. mari |
ABX75857 |
GpgS |
Glucosylglycerate synthetase |
|
ABX75858 |
GpgP |
||
|
|
|||
|
sll0689 |
NhaS3 |
Na+/H+ antiporter |
|
|
|
|||
|
sll0493 |
KtrA |
Predominant K+ transporter playing a major |
|
|
slr1509 |
KtrB |
role in K+ uptake under osmotic stress |
|
|
slr1508 |
KtrE |
||
|
|
|||
|
slr1728 |
KdpA |
High-affinity K+ channel playing a minor role |
|
|
slr1729 |
KdpB |
in K+ uptake under osmotic stress |
|
|
slr1730 |
KdpC |
||
|
|
|||
|
PCC6803 |
slr1731 |
KdpD |
Two component system activating Kdp expression under osmotic stress |
|
|
|||
|
sll0045 |
SpsA |
Sucrose synthetase |
|
|
|
|||
|
slr1312 |
SpeA |
Arginine synthetase |
|
|
slr0662 |
SpeA |
||
|
|
|||
|
slr0747 |
GgtA |
Glucosylglycerol/trehalose/sucrose |
|
|
slr0529 |
GgtB |
transporter |
|
|
slr0530 |
GgtC |
||
|
slr0531 |
GgtD |
||
|
|
|||
|
sll1546 |
GgpS |
Glucosylglycerol synthetases |
|
|
slr0746 |
GgpP |
||
|
|
|||
|
sll0306 |
RpoD |
RNA polymerase, Sigma 70 (sigma D) factor |
|
|
|
|||
|
Mao et al. BMC Genomics 2010 11:291 doi:10.1186/1471-2164-11-291 |
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