Table 1

Components in the template models

Organism

Gene

Symbol

Function


AB094497

GsmT

Betaine synthetases with glycine as the

A. halo

AB094498

SdmT

substrate


BAB69459

apNhaP

Na+/H+ antiporter


cg1016

BetP

Betaine transporter


C. glut

cg0864

MtrB

Two-component system that senses osmotic

cg0862

MtrA

stress


b0019

NhaA

Na+ antiporter

b1186

NhaB


b0020

NhaR

Na+/H+ antiporter regulator


b3290

TrkA

Predominant K+ channel

b1291

TrkE

b1363

TrkG

b3893

TrkH


b3747

Kup

K+ channel playing a major role in neutral or slightly alkaline environments


b0698

KdpA

High-affinity K+ channel playing a major role

b0697

KdpB

under osmotic stress

b0696

KdpC

b4513

KdpF


b0694

KdpE

Two component system activating Kdp

E. coli

b0695

KdpD

expression under osmotic stress


b0311

BetA

Betaine synthetases with proline as the

b0312

BetB

substrate


b0314

BetT

Proline transporter


b1896

OtsA

Trehalose synthetases with UDPG as the

b1897

OtsB

substrate


b2677

ProV

Betaine/proline transporter

b2678

ProW

b2679

ProX


b2938

SpeA

Arginine synthetase


b3404

EnvZ

Two-component system regulating OmpC and

b3405

OmpR

OmpF under osmotic stress


b0929

OmpF

Porin-encoding genes

b2215

OmpC


b4111

ProP

Betaine/proline transporter


b2741

σ38

RNA polymerase, Sigma 38 (Sigma S) factor


b1126

PotA

Putrescine/spermidine transporter

b1125

PotB

b1124

PotC

b1123

PotD


b0854

PotF

Putrescine transporter

b0855

PotG

b0856

PotH

b0857

PotI


P. mari

ABX75857

GpgS

Glucosylglycerate synthetase

ABX75858

GpgP


sll0689

NhaS3

Na+/H+ antiporter


sll0493

KtrA

Predominant K+ transporter playing a major

slr1509

KtrB

role in K+ uptake under osmotic stress

slr1508

KtrE


slr1728

KdpA

High-affinity K+ channel playing a minor role

slr1729

KdpB

in K+ uptake under osmotic stress

slr1730

KdpC


PCC6803

slr1731

KdpD

Two component system activating Kdp expression under osmotic stress


sll0045

SpsA

Sucrose synthetase


slr1312

SpeA

Arginine synthetase

slr0662

SpeA


slr0747

GgtA

Glucosylglycerol/trehalose/sucrose

slr0529

GgtB

transporter

slr0530

GgtC

slr0531

GgtD


sll1546

GgpS

Glucosylglycerol synthetases

slr0746

GgpP


sll0306

RpoD

RNA polymerase, Sigma 70 (sigma D) factor


Mao et al. BMC Genomics 2010 11:291   doi:10.1186/1471-2164-11-291

Open Data