Table 6

Distribution of transcription factor binding sites across mosaic classes for sites more than 1500 bases from a TSS

Data Source

Factor

Q

Sites

Pair 2

Pair 7

Pair 9

Pair 14

Total

Note 1

Note 2

Note 3

Note 4

Note 5

Note 5

Note 5

Note 5

Note 6


HAIB-K562

GABP

0.23

593

0.087

0.126

0.254

0.458

0.925

HAIB-K562

NRSF

0.85

1714

0.261

0.254

0.264

0.069

0.849

HAIB-K562

SRF

0.76

280

0.424

0.098

0.119

0.112

0.752

YALE-GM128

NFKB

0.85

2267

0.336

0.169

0.132

0.021

0.658

YALE-HCT116

TCF7L2

0.91

3075

0.280

0.116

0.057

0.012

0.466

YALE-HepG2

SREBP1

0.57

2844

0.283

0.132

0.135

0.065

0.615

YALE-K562b

GATA1

0.89

3011

0.330

0.231

0.139

0.021

0.721

YALE-K562b

TR4

0.35

191

0.144

0.162

0.322

0.110

0.738

YALE-K562b

ZNF263

0.80

4079

0.051

0.221

0.501

0.073

0.845

YALE-K562

cFos

0.94

3523

0.290

0.190

0.107

0.011

0.598

YALE-K562

Max

0.77

2453

0.237

0.121

0.193

0.065

0.615

YALE-K562

NF-E2

0.93

4380

0.275

0.152

0.086

0.011

0.524

YALE-NT2D1

YY1

0.61

1804

0.338

0.203

0.189

0.099

0.828

YALE-K562-Ia30

STAT1

0.86

898

0.414

0.111

0.067

0.019

0.611

ORegAnno

CTCF

0.90

4368

0.212

0.192

0.363

0.134

0.901

TRANSFAC

sp1

0.41

281

0.063

0.151

0.529

0.206

0.949

TRANSFAC

p53

0.95

579

0.271

0.210

0.075

0.004

0.560


Average of above

0.253

0.167

0.208

0.088

0.715


Genome proportions

0.134

0.071

0.042

0.009

0.256

Model proportions

0.134

0.069

0.042

0.009

0.255

Promoter region

0.170

0.069

0.128

0.233

0.600


Note 8) Column 3 gives the proportion, Q, of sites that are more than 1500 bases from a transcription start site, and column 4 gives the number of these sites. Other notes are as for Table 2.

Evans BMC Genomics 2010 11:286   doi:10.1186/1471-2164-11-286

Open Data