Email updates

Keep up to date with the latest news and content from BMC Genomics and BioMed Central.

Open Access Research article

Copy number variation in the bovine genome

João Fadista, Bo Thomsen, Lars-Erik Holm and Christian Bendixen*

Author Affiliations

Group of Molecular Genetics and Systems Biology, Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, Aarhus University, Blichers Allé 20, DK-8830 Tjele, Denmark

For all author emails, please log on.

BMC Genomics 2010, 11:284  doi:10.1186/1471-2164-11-284

Published: 6 May 2010

Additional files

Additional file 1:

Excel file includes Table S1. CNV regions detected and the number of CNVs per sample.

Format: XLS Size: 63KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

Powerpoint file includes Figure S1. Pedigree for the related animals. The numbers correspond to the sample ID, described in Table S1.

Format: PPT Size: 132KB Download file

This file can be viewed with: Microsoft PowerPoint Viewer

Open Data

Additional file 3:

Excel file includes Figure S2. Correlation between chromosome length and number of CNVRs.

Format: XLS Size: 27KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 11:

Excel file includes Table S9. Sequences in ChrUn that putatively belong to chromosome Y.

Format: XLS Size: 14KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

Excel file includes Table S2. CNVRs and ensembl genes within CNVRs.

Format: XLS Size: 117KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

Excel file includes Table S3. Cow-human ortholog genes with the respective dN and dS values (data from Ensembl database [52]).

Format: XLS Size: 3MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 6:

Text file includes Table S4. Genes within CNV regions for which cow-human orthology exist and have a OMIM morbid ID [62].

Format: TXT Size: 5KB Download file

Open Data

Additional file 7:

Excel file includes Table S5. Genes within CNV regions for which cow-human orthology exist and have been associated with a phenotype by a GWAS study.

Format: XLS Size: 16KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 8:

Excel file includes Table S6. All CNVRs and QTLs within 2 Mb of a CNVR.

Format: XLS Size: 59KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 9:

Excel file includes Table S7. All CNVRs and OMIA genes within 2 Mb of a CNVR.

Format: XLS Size: 59KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 10:

Excel file includes Table S8. Primers and result plots for the RT-PCR experiments.

Format: XLS Size: 91KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 12:

Excel file includes Table S10. Array CGH hybridizations. Extra information on the samples and experiment design is in GEO [92].

Format: XLS Size: 23KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data