Table 6

Characteristics of the TRs found in the CDS regions, introns, and intergenic regions of D. pulex, D. melanogaster, and A. mellifera.

Daphnia pulex

Drosophila melanogaster

Apis mellifera


CDS

introns

intergenic

CDS

introns

intergenic

CDS

introns

intergenic


#sequences

4175

22763

53058

4340

30418

32625

863

18130

222929

Min length

13

13

13

13

13

13

13

13

13

Max length

2460

682

3303

9420

3049

33848

1151

943

3005

Median length

23.0

18.0

19.0

24.0

20.0

21.0

27.0

22.0

22.0

Mean length

45.9

20.8

27.3

38.5

24.5

44.4

57.5

26.5

26.3

SD lengths

86.5

14.7

54.7

161.7

44.4

400.1

92.8

25.0

30.2

# positions

191505

472915

1446267

167031

746049

1447496

49605

480452

5863495

A

0.300

0.271

0.306

0.333

0.335

0.282

0.363

0.396

0.403

C

0.295

0.188

0.195

0.306

0.172

0.217

0.164

0.083

0.098

G

0.254

0.182

0.193

0.263

0.159

0.219

0.230

0.084

0.098

T

0.151

0.359

0.307

0.099

0.334

0.281

0.243

0.438

0.401

CG

0.549

0.370

0.387

0.568

0.331

0.437

0.394

0.166

0.196

corrected CpG

0.762

0.434

0.612

0.409

0.622

1.137

0.820

1.113

1.191

corrected CpNpG

1.187

0.860

0.942

1.695

1.381

1.709

0.856

0.551

0.545

A/T

1.991

0.754

0.996

3.383

1.005

1.002

1.496

0.905

1.004

C/G

1.160

1.035

1.012

1.162

1.081

0.991

0.713

0.983

0.996


Mayer et al. BMC Genomics 2010 11:277   doi:10.1186/1471-2164-11-277

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