Table 2 |
|||||||
|
Main characteristics of STRs in the genome of Daphnia pulex and 11 other taxa. |
|||||||
|
Mono |
Di |
Tri |
Tetra |
Penta |
Hexa |
total |
|
|
|
|||||||
|
D. pulex |
|||||||
|
total counts |
17161 |
16104 |
21458 |
4630 |
3476 |
2382 |
65211 |
|
density [bp/Mbp] |
1747.1 |
1884.8 |
2662.0 |
632.9 |
534.8 |
418.0 |
7866.0 |
|
density [%] |
22.2 |
23.9 |
33.8 |
8.0 |
6.8 |
5.3 |
100.0 |
|
mean length |
16.2 |
18.6 |
19.7 |
21.7 |
24.5 |
27.8 |
19.2 |
|
standard deviation |
4.1 |
5.5 |
6.4 |
11.2 |
20.2 |
22.9 |
|
|
|
|||||||
|
D. melanogaster |
|||||||
|
total counts |
15701 |
14511 |
9622 |
4770 |
5984 |
8220 |
58808 |
|
density [bp/Mbp] |
1639.0 |
1961.6 |
1543.7 |
939.2 |
3253.7 |
1538.1 |
10876.0 |
|
density [%] |
15.1 |
18.0 |
14.2 |
8.6 |
29.9 |
14.1 |
100.0 |
|
Mean length |
17.0 |
22.0 |
26.1 |
32.1 |
89.3 |
30.6 |
30.2 |
|
standard deviation |
10.1 |
13.3 |
31.0 |
65.3 |
189.5 |
52.8 |
|
|
|
|||||||
|
A. mellifera |
|||||||
|
total counts |
54104 |
69036 |
28005 |
16755 |
11528 |
8673 |
188101.0 |
|
density [bp/Mbp] |
4166.4 |
7860.8 |
3181.9 |
1742.1 |
1313.4 |
1008.6 |
19184.1 |
|
density [%] |
21.6 |
40.8 |
16.5 |
9.0 |
6.8 |
5.2 |
100.0 |
|
mean length |
17.8 |
26.3 |
26.3 |
24.1 |
26.5 |
27.0 |
23.7 |
|
standard deviation |
6.0 |
17.1 |
24.1 |
18.0 |
29.6 |
55.0 |
|
|
|
|||||||
|
C. elegans |
|||||||
|
total counts |
4104 |
3004 |
2570 |
927 |
582 |
2430 |
13617 |
|
density [bp/Mbp] |
653.4 |
727.3 |
480.6 |
224.9 |
120.2 |
1373.0 |
3577.7 |
|
density [%] |
18.3 |
20.3 |
13.4 |
6.3 |
3.4 |
38.4 |
100.0 |
|
mean length |
16.0 |
24.3 |
18.8 |
24.3 |
20.7 |
56.8 |
26.4 |
|
standard deviation |
3.8 |
23.5 |
5.4 |
32.1 |
6.9 |
72.3 |
|
|
|
|||||||
|
H. sapiens |
|||||||
|
total counts |
591617 |
224459 |
77621 |
200797 |
105107 |
55324 |
1254925 |
|
density [bp/Mbp] |
3889.6 |
2267.4 |
658.7 |
2249.0 |
1032.1 |
511.5 |
10547.3 |
|
density [%] |
36.7 |
21.4 |
6.2 |
21.2 |
9.7 |
4.8 |
100.0 |
|
Mean length |
18.8 |
28.9 |
24.3 |
32.2 |
28.3 |
26.5 |
24.2 |
|
standard deviation |
5.7 |
20.7 |
28.9 |
53.4 |
84.7 |
24.7 |
|
|
|
|||||||
|
M. musculus |
|||||||
|
total counts |
286206 |
563483 |
127365 |
351575 |
140683 |
93653 |
1562965 |
|
density [bp/Mbp] |
2107.5 |
8913.8 |
1877.2 |
5360.1 |
1994.9 |
1517.1 |
21601.6 |
|
density [%] |
9.7 |
40.9 |
8.6 |
24.6 |
9.2 |
7.0 |
100.0 |
|
Mean length |
18.8 |
40.4 |
37.7 |
39.2 |
36.6 |
41.6 |
35.7 |
|
standard deviation |
7.4 |
31.7 |
45.3 |
40.4 |
36.4 |
49.3 |
|
|
|
|||||||
|
G. gallus |
|||||||
|
total counts |
142803 |
27674 |
21667 |
39190 |
24240 |
9382 |
264956 |
|
density [bp/Mbp] |
2617.8 |
625.8 |
450.1 |
1138.0 |
964.8 |
330.2 |
6094.5 |
|
density [%] |
42.7 |
10.2 |
7.3 |
18.6 |
15.7 |
5.4 |
100.0 |
|
Mean length |
18.1 |
22.3 |
20.5 |
28.8 |
39.5 |
35.0 |
22.8 |
|
standard deviation |
6.0 |
11.2 |
7.8 |
34.1 |
46.3 |
41.6 |
|
|
|
|||||||
|
A. thaliana |
|||||||
|
total counts |
10492 |
6471 |
6017 |
982 |
1540 |
1840 |
27342 |
|
density [bp/Mbp] |
1468.7 |
1264.9 |
1052.8 |
158.9 |
253.7 |
350.0 |
4544.2 |
|
density [%] |
32.3 |
27.8 |
23.1 |
3.5 |
5.6 |
7.7 |
100.0 |
|
Mean length |
16.7 |
23.3 |
20.8 |
19.3 |
19.6 |
22.7 |
19.8 |
|
standard deviation |
4.2 |
13.9 |
14.1 |
9.1 |
3.7 |
7.8 |
|
|
|
|||||||
|
T. pseudonana |
|||||||
|
total counts |
29 |
344 |
2222 |
237 |
101 |
202 |
3135 |
|
density [bp/Mbp] |
13.0 |
235.8 |
1457.0 |
188.0 |
66.4 |
385.3 |
2344.3 |
|
density [%] |
0.6 |
10.1 |
62.1 |
8.0 |
2.8 |
16.4 |
100.0 |
|
mean length |
14.0 |
21.4 |
20.5 |
24.7 |
20.5 |
59.5 |
23.4 |
|
standard deviation |
1.5 |
9.3 |
16.5 |
12.1 |
3.3 |
123.2 |
|
|
|
|||||||
|
O. lucimarinus |
|||||||
|
total counts |
5 |
2051 |
2208 |
285 |
610 |
1124 |
6283 |
|
density [bp/Mbp] |
5.0 |
3075.5 |
3980.7 |
553.7 |
1160.2 |
2223.8 |
10941.6 |
|
density [%] |
0.0 |
28.0 |
36.2 |
5.0 |
10.5 |
20.2 |
100.0 |
|
Mean length |
13.2 |
19.8 |
23.8 |
25.7 |
25.2 |
26.2 |
23.1 |
|
standard deviation |
0.5 |
8.2 |
11.0 |
9.6 |
9.3 |
9.9 |
|
|
|
|||||||
|
N. crassa |
|||||||
|
total counts |
3216 |
915 |
4484 |
1788 |
1000 |
1889 |
13292 |
|
density [bp/Mbp] |
1971.0 |
535.5 |
2752.7 |
1095.2 |
619.3 |
1250.6 |
8207.7 |
|
density [%] |
24.0 |
6.5 |
33.5 |
13.3 |
7.5 |
15.2 |
100.0 |
|
Mean length |
24.0 |
23.0 |
24.1 |
24.0 |
24.4 |
26.1 |
24.3 |
|
standard deviation |
11.7 |
14.4 |
17.6 |
14.4 |
10.7 |
14.7 |
|
|
|
|||||||
|
S. cerevisiae |
|||||||
|
total counts |
810 |
335 |
414 |
67 |
71 |
256 |
1953 |
|
density [bp/Mbp] |
1157.7 |
646.7 |
900.4 |
118.6 |
133.4 |
639.1 |
3563.5 |
|
density [%] |
32.2 |
18.0 |
25.0 |
3.3 |
3.7 |
17.8 |
100.0 |
|
mean length |
17.3 |
23.3 |
26.5 |
21.4 |
22.7 |
30.2 |
22.3 |
|
standard deviation |
5.5 |
10.8 |
15.4 |
8.0 |
5.4 |
27.7 |
|
|
|
|||||||
|
Mayer et al. BMC Genomics 2010 11:277 doi:10.1186/1471-2164-11-277 |
|||||||
