Table 2

Main characteristics of STRs in the genome of Daphnia pulex and 11 other taxa.

Mono

Di

Tri

Tetra

Penta

Hexa

total


D. pulex

total counts

17161

16104

21458

4630

3476

2382

65211

density [bp/Mbp]

1747.1

1884.8

2662.0

632.9

534.8

418.0

7866.0

density [%]

22.2

23.9

33.8

8.0

6.8

5.3

100.0

mean length

16.2

18.6

19.7

21.7

24.5

27.8

19.2

standard deviation

4.1

5.5

6.4

11.2

20.2

22.9


D. melanogaster

total counts

15701

14511

9622

4770

5984

8220

58808

density [bp/Mbp]

1639.0

1961.6

1543.7

939.2

3253.7

1538.1

10876.0

density [%]

15.1

18.0

14.2

8.6

29.9

14.1

100.0

Mean length

17.0

22.0

26.1

32.1

89.3

30.6

30.2

standard deviation

10.1

13.3

31.0

65.3

189.5

52.8


A. mellifera

total counts

54104

69036

28005

16755

11528

8673

188101.0

density [bp/Mbp]

4166.4

7860.8

3181.9

1742.1

1313.4

1008.6

19184.1

density [%]

21.6

40.8

16.5

9.0

6.8

5.2

100.0

mean length

17.8

26.3

26.3

24.1

26.5

27.0

23.7

standard deviation

6.0

17.1

24.1

18.0

29.6

55.0


C. elegans

total counts

4104

3004

2570

927

582

2430

13617

density [bp/Mbp]

653.4

727.3

480.6

224.9

120.2

1373.0

3577.7

density [%]

18.3

20.3

13.4

6.3

3.4

38.4

100.0

mean length

16.0

24.3

18.8

24.3

20.7

56.8

26.4

standard deviation

3.8

23.5

5.4

32.1

6.9

72.3


H. sapiens

total counts

591617

224459

77621

200797

105107

55324

1254925

density [bp/Mbp]

3889.6

2267.4

658.7

2249.0

1032.1

511.5

10547.3

density [%]

36.7

21.4

6.2

21.2

9.7

4.8

100.0

Mean length

18.8

28.9

24.3

32.2

28.3

26.5

24.2

standard deviation

5.7

20.7

28.9

53.4

84.7

24.7


M. musculus

total counts

286206

563483

127365

351575

140683

93653

1562965

density [bp/Mbp]

2107.5

8913.8

1877.2

5360.1

1994.9

1517.1

21601.6

density [%]

9.7

40.9

8.6

24.6

9.2

7.0

100.0

Mean length

18.8

40.4

37.7

39.2

36.6

41.6

35.7

standard deviation

7.4

31.7

45.3

40.4

36.4

49.3


G. gallus

total counts

142803

27674

21667

39190

24240

9382

264956

density [bp/Mbp]

2617.8

625.8

450.1

1138.0

964.8

330.2

6094.5

density [%]

42.7

10.2

7.3

18.6

15.7

5.4

100.0

Mean length

18.1

22.3

20.5

28.8

39.5

35.0

22.8

standard deviation

6.0

11.2

7.8

34.1

46.3

41.6


A. thaliana

total counts

10492

6471

6017

982

1540

1840

27342

density [bp/Mbp]

1468.7

1264.9

1052.8

158.9

253.7

350.0

4544.2

density [%]

32.3

27.8

23.1

3.5

5.6

7.7

100.0

Mean length

16.7

23.3

20.8

19.3

19.6

22.7

19.8

standard deviation

4.2

13.9

14.1

9.1

3.7

7.8


T. pseudonana

total counts

29

344

2222

237

101

202

3135

density [bp/Mbp]

13.0

235.8

1457.0

188.0

66.4

385.3

2344.3

density [%]

0.6

10.1

62.1

8.0

2.8

16.4

100.0

mean length

14.0

21.4

20.5

24.7

20.5

59.5

23.4

standard deviation

1.5

9.3

16.5

12.1

3.3

123.2


O. lucimarinus

total counts

5

2051

2208

285

610

1124

6283

density [bp/Mbp]

5.0

3075.5

3980.7

553.7

1160.2

2223.8

10941.6

density [%]

0.0

28.0

36.2

5.0

10.5

20.2

100.0

Mean length

13.2

19.8

23.8

25.7

25.2

26.2

23.1

standard deviation

0.5

8.2

11.0

9.6

9.3

9.9


N. crassa

total counts

3216

915

4484

1788

1000

1889

13292

density [bp/Mbp]

1971.0

535.5

2752.7

1095.2

619.3

1250.6

8207.7

density [%]

24.0

6.5

33.5

13.3

7.5

15.2

100.0

Mean length

24.0

23.0

24.1

24.0

24.4

26.1

24.3

standard deviation

11.7

14.4

17.6

14.4

10.7

14.7


S. cerevisiae

total counts

810

335

414

67

71

256

1953

density [bp/Mbp]

1157.7

646.7

900.4

118.6

133.4

639.1

3563.5

density [%]

32.2

18.0

25.0

3.3

3.7

17.8

100.0

mean length

17.3

23.3

26.5

21.4

22.7

30.2

22.3

standard deviation

5.5

10.8

15.4

8.0

5.4

27.7


Mayer et al. BMC Genomics 2010 11:277   doi:10.1186/1471-2164-11-277

Open Data