Table 2

Quantity structure of linkage analysis results in vertebrates

Homo Sapiens

Pan Troglodytes

Pongo Pygmaeus

Macaca Mulatta

Mus Musculus

Monodelphis Domestica

Gallus Gallus

Xenopus Tropicalis


Homo Sapiens

493

22,312

20,143

17,154

453,512

167,537

985

6341

444

494

438

488

438

387

442

22,206

442

20,398

366

155

383

332

0.9

0.98

0.89

0.95

0.89

0.86

0.9

0.91

0.9

0.94

0.74

0.93

0.78

0.57


Pan Troglodytes

504

8,641

22,375

17,073

176,153

182,022

1,048

6,201

366

394

497

503

498

391

504

22,963

503

20,847

400

160

395

364

0.73

0.8

0.99

0.98

0.99

0.87

1

0.94

1

0.96

0.79

0.96

0.78

0.62


Pongo Pygmaeus

512

8,673

7,556

16,838

179,360

183,128

1,033

6,585

349

368

330

375

494

390

512

22,716

512

20,797

411

158

450

348

0.68

0.75

0.64

0.74

0.96

0.87

1

0.93

1

0.95

0.8

0.95

0.88

0.59


Macaca Mulatta

450

6,301

5,881

5,488

152,984

152,619

909

5,550

309

368

284

363

286

333

393

22,588

393

20,646

332

156

355

347

0.69

0.75

0.63

0.72

0.64

0.65

0.87

0.93

0.87

0.95

0.74

0.94

0.79

0.59


Mus Musculus

24352

6,212

5,958

6,289

5,151

10,073,201

65,044

106,441

2,030

382

2,294

369

2,126

395

2,211

351

24,336

21,809

20,643

166

20,716

422

0.08

0.77

0.09

0.73

0.09

0.77

0.09

0.78

1

1

0.85

1

0.85

0.72


Monodelphis Domestica

21810

3,395

3,766

3,677

4,017

190,815

67,383

106,233

1,750

318

2,071

363

1,846

35

2,123

353

16,634

19,466

19,290

166

19,306

416

0.08

0.65

0.09

0.72

0.08

0.07

0.1

0.78

0.76

0.8

0.88

1

0.89

0.71


Gallus Gallus

166

44

46

43

42

1,398

1,560

569

38

38

38

39

35

38

32

38

132

1,169

130

1276

142

236

0.23

0.08

0.23

0.08

0.21

0.07

0.19

0.08

0.8

0.05

0.78

0.06

0.86

0.4


Xenopus Tropicalis

586

77

74

79

59

912

802

16

24

72

25

69

23

65

26

53

126

708

115

630

16

12

0.04

0.15

0.04

0.14

0.04

0.13

0.04

0.12

0.22

0.03

0.2

0.03

0.03

0.07


The upper right triangle quantifies the single-sided linkage results whereas the lower left triangle represents the number of two-sided linkage analysis results. Each table entry is organized as follows: The top row lists the number of synteny associations; Below, the the sizes of domain and range, i.e., the numbers of tDNAs in the two species, are given. The third line gives the corresponding coverage, i.e., the fraction of syntenically conserved tDNAs in the two species.

Bermudez-Santana et al. BMC Genomics 2010 11:270   doi:10.1186/1471-2164-11-270

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