Table 5

List of the important KEGG pathways more than 3 miRNA-target genes affiliated

KEGGa pathway

Genesb

Gene ID

Best E-value


Benzoate degradation

5

EY732960, EY732985, EY748192, TC18796, TC9807

1.00E-125

Carbon fixation

8

EY665527, EY667061, TC11997, TC13950, TC17473, TC24400, EY722705, TC11997

1.00E-128

Ethylbenzene degradation

5

EY732960, EY732985, EY748192, TC18796, TC9807

1.00E-156

Fatty acid metabolism

5

EY732960, EY732985, EY748192, TC18796, TC9807

1.00E-156

Flavonoid biosynthesis

6

EY697662, EY742573, TC14650, TC3846, TC14650, TC3846

6.00E-93

Geraniol degradation

5

EY732960, EY732985, EY748192, TC18796, TC9807

1.00E-156

Glyoxylate and dicarboxylate metabolism

3

EY667061, EY708354, EY722705

2.00E-86

Linolenic acid metabolism

5

EY732960, EY732985, EY748192, TC18796, TC9807

1.00E-122

Methane metabolism

3

EY697129, EY724821, TC20228

1.00E-68

Pentose phosphate pathway

3

TC13950, TC17473, TC15377

5.00E-58

Phenylalanine metabolism

4

EY664657, EY697129, NP13097244, TC20228

1.00E-167

Photosynthesis - antenna proteins

5

EY672715, EY682256, EY701112, EY701374, EY756276

1.00E-102

Ribosome

3

EY681302, EY752996, TC18634

2.00E-91

Terpenoid biosynthesis

3

EY730974, TC363, EY752486

6.00E-84

Ubiquitin mediated proteolysis

3

EY656660, EY665372, EY752038

2.00E-83

Valine leucine and isoleucine degradation

6

EY732985, EY732960, EY748192, TC18796, TC9807, TC5927

1.00E-156


aKEGG = Kyoto Encyclopedia of Genes and Genomes.

bThe putative target genes of miRNA genes which differentially expressed significant at 0.05 level between the mutant and wild type

Xu et al. BMC Genomics 2010 11:246   doi:10.1186/1471-2164-11-246

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