Table 4 |
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|
Top 20 differentially expressed miRNAs between WT and MT |
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|
miRNA |
Sequence |
WT counta |
MT counta |
Fold change |
p-value |
|
|
|||||
|
Higher expression in MT |
|||||
|
csi-miR479 |
UGUGAUAUUGGUUCGGCUCAUC |
1341.6 |
1921.5 |
1.9 |
0 |
|
csi-miR156a |
UGACAGAAGAGAGUGAGCAC |
856.2 |
1656.1 |
2.6 |
0 |
|
csi-miR167a |
UGAAGCUGCCAGCAUGAUCUA |
759.6 |
1967.3 |
21.6 |
0 |
|
csi-miR171b |
CGAGCCGAAUCAAUAUCACUC |
28.5 |
615.4 |
4.5 |
0 |
|
csi-novel-08 |
UAGAUAAAGAUGAGAGAAAAA |
220.1 |
1248.5 |
1.5 |
0 |
|
csi-miR166j |
UCUCGGACCAGGCUUCAUUCC |
1682.9 |
2078.5 |
3.1 |
2.85E-22 |
|
Lower expression in MT |
|||||
|
csi-miR482a |
UCUUCCCUAUGCCUCCCAUUCC |
103.9 |
4.2 |
15.6 |
0 |
|
csi-miR162a |
UCGAUAAACCUCUGCAUCCAG |
401.0 |
25.7 |
12.4 |
0 |
|
csi-miR159a |
UUUGGAUUGAAGGGAGCUCUA |
307.8 |
24.8 |
3.5 |
0 |
|
csi-miR390a |
AAGCUCAGGAGGGAUAGCGCC |
822.2 |
235.8 |
2.5 |
0 |
|
csi-miR164a |
UGGAGAAGCAGGGCACGUGCA |
1894.0 |
749.0 |
1.6 |
0 |
|
csi-miR167d |
UGAAGCUGCCAGCAUGAUCUGA |
1362.3 |
825.8 |
1.4 |
0 |
|
csi-miR172a |
AGAAUCUUGAUGAUGCUGCAU |
4688.4 |
3299.7 |
1.4 |
0 |
|
csi-novel-11 |
UGGACAGAGAAAUCACGGUCA |
591.5 |
132.7 |
5.7 |
0 |
|
csi-miR156b |
CUGACAGAAGACAGUGAGCAC |
41.3 |
1.8 |
2.5 |
2.86E-27 |
|
csi-miR473a |
ACUCUCCCUCAAGGGCUUCGC |
168.1 |
68.1 |
1.2 |
2.01E-26 |
|
csi-novel-03 |
UGAAGGGCCUUUCUAGAGCAC |
90.5 |
29.6 |
8.1 |
2.87E-20 |
|
csi-miR399a |
UGCCAAAGGAGAAUUGCCCUG |
36.3 |
4.5 |
13.8 |
3.14E-18 |
|
csi-miR482c |
UCUUGCCCACCCCUCCCAUUCC |
29.0 |
2.1 |
15.6 |
8.98E-18 |
|
Csi-miR164d |
UGGAGAAGCAGGGCACGUGCU |
49.1 |
11.1 |
4.4 |
7.6E-17 |
|
|
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|
a count was normalized as transcripts per million (TPM). |
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|
Xu et al. BMC Genomics 2010 11:246 doi:10.1186/1471-2164-11-246 |
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