Table 1

Summary of sRNAs sequences from WT and MT sweet orange

Category

Distinct signatures

Total signatures

Mean frequencies


WT

MT

WT

MT

WT

MT

matching protein-coding gene

sense

13811 (6.80%)

18142 (5.66%)

244819 (13.67%)

346569 (10.36%)

17.73

19.10

antisense

8281 (4.08)

10651 (3.32%)

120749 (6.74%)

162839 (4.87%)

14.58

15.29

non-protein-coding RNAs

snoRNA

13 (0.01%)

14 (0.01%)

471 (0.03%)

149 (0.01%)

36.23

10.64

snRNA

39 (0.02%)

104 (0.03%)

261 (0.01%)

859 (0.03%)

6.69

8.26

tRNA

647 (0.32%)

1301 (0.41%)

21932 (1.22%)

73778 (2.21%)

33.90

56.71

rRNA

2747 (1.35%)

3772 (1.18%)

59535 (3.33%)

99252 (2.97%)

21.67

26.31

miRNAs

known

667 (0.33%)

802 (0.25%)

61993 (3.46%)

87455 (2.61%)

92.94

109.05

novel

83 (0.04%)

111 (0.03%)

4084 (0.23%)

11463 (0.34%)

49.20

103.27

other sRNAs

176677 (87.05%)

285546 (89.11%)

1276551 (71.30%)

2563382 (76.62%)

7.23

8.98

total

202965 (100%)

320443 (100%)

1790395 (100%)

3345746 (100%)

8.82

10.44


Xu et al. BMC Genomics 2010 11:246   doi:10.1186/1471-2164-11-246

Open Data