Research article
Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data
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* Corresponding author: Yasubumi Sakakibara yasu@bio.keio.ac.jp
1 Department of Biosciences and Informatics, Keio University, Hiyoshi, Kohoku-ku, Yokohama, Japan
2 Department of Computer and Information Science, Seikei University, Musashino, Tokyo, Japan
3 Center for Genetic Resource Information, National Institute of Genetics, Shizouka, Japan
4 Principles of Informatics Research Division, National Institute of Informatics, Tokyo, Japan
5 Institute for Advanced Biosciences, Keio University, Minato, Tokyo, Japan
BMC Genomics 2010, 11:243 doi:10.1186/1471-2164-11-243
Published: 16 April 2010Additional files
Additional file 1:
Figure S1. Ability of Bacillus subtilis BEST195 to produce Natto by laboratory assay protocol.
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Additional file 2:
Data S1. Re-sequencing results for B. subtilis Marburg 168.
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Additional file 3:
Figure S2. Number of read in plipastatin biosynthesis operon region for both genomes.
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Additional file 4:
Table S1. The list of locations of predicted transposases on BEST195 draft.
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Additional file 5:
Data S2. The list of all the comprehensive sequence alignments for 3610 orthologous genes between B. subtilis natto BEST195 and Marburg 168.
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Additional file 6:
Figure S3. The link plot of five Bacillus species genome comparison, and the dot plot of a pairwise comparison of orthologous genes between BEST195 and Marburg 168, B. amyloliquefaciens, B. licheniformis, and B. pumilus respectively.
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Additional file 7:
Figure S4. Pipeline combining two assembly methods.
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