Table 2

Summary of common copy number variation regions in Bos taurus coreanae (freq. >2.5%)

CNV region

Length (bp)

No. of CNVs

Frequency

No. of genes

Genes


chr15:1836732-2039483

202,751

35

0.132

0

chr5:11483310-11889745

406,435

28

0.106

0

chr17:75520590-76487768

967,178

24

0.091

21

ARVCF, C17H22orf25, CDC45L, CLDN5, COMT, DGCR14, DGCR2, DGCR8, FAM128B, LOC515651, MED15, PI4KA, RANBP1, SEPT5, SERPIND1, SLC25A1, SNAP29, THAP7, TUBA3E, TXNRD2, UFD1L

chr17:15002419-15372017

369,598

22

0.083

1

SMARCA5

chr13:54700988-55222116

521,128

16

0.060

12

ARFGAP1, ARFRP1, C13H20ORF11, C13H20orf149, C13H20orf195, DIDO1, EEF1A2, RTEL, SLC17A9, STMN3, TNFRSF6B, ZGPAT

chr20:31559229-31832019

272,790

15

0.057

0

chr3:36163190-36338393

175,203

13

0.049

2

CSF1,GSTM3

chr4:10009287-10665698

656,411

13

0.049

3

GATAD1, LOC524650, MGC148329

chr5:102164053-102261488

97,435

10

0.038

2

GUCY2C, PLBD1

chr19:12442436-12611334

168,898

10

0.038

0

chr11:109101259-109497448

396,189

9

0.034

10

C11H9ORF142, C8G, CLIC3, EDF1, KIAA1984, MAMDC4, PARF, PHPT1, PTGDS, TMEM141

chr18:10398490-10604602

206,112

9

0.034

1

MGC140224

chr18:48593919-48725107

131,188

9

0.034

6

EID2, MED29, RPS16, SUPT5H, TIMM50, ZFP36

chr20:46603190-46767627

164,437

9

0.034

0

chr25:42346692-42719563

372,871

9

0.034

3

CARD11, CHST12, LFNG

chr1:40050487-40150878

100,391

8

0.030

0

chr5:123127110-123347200

220,090

8

0.030

1

PPARA

chr7:4650135-5033417

383,282

8

0.030

11

CIST1, IFI30, ISYNA1, JUND, LRRC25, LSM4, MPV17L2, PGPEP1, PIK3R2, RAB3A, SSBP4

chr17:24499559-24727631

228,072

8

0.030

0

chr20:51402609-51459233

56,624

8

0.030

0

chr6:56495043-56634157

139,114

7

0.026

0

chr10:90756777-90887327

130,550

7

0.026

0


Bae et al. BMC Genomics 2010 11:232   doi:10.1186/1471-2164-11-232

Open Data