Table 3

Putative CP220 CDSs showing homology to proteins in Campylobacter and closely related species Helicobacter, Arcobacter and Wolinella

CP220 CDS

CP220

Lengtha

Source Organism, Functionb

Lengtha, Identity (%) (E value)c


CPT_0017

264

Arcobacter butzleri RM4018.; Radical SAM domain protein

254, 115/252 (45%) (2e-53)


CPT_0040

70

Helicobacter hepaticus ATCC 51449,; Hypothetical protein HH0764

62, 22/57 (38%) (4e-04)


CPT_0066

328

Campylobacter upsaliensis RM3195.; Hypothetical protein CUPA0063

305, 83/296 (28%) (2e-17)


CPT_0084

342

Campylobacter fetus subsp. fetus 82-40.; Heme biosynthesis protein, putative

354, 45/178 (25%) (1e-07)


CPT_0095

144

Campylobacter jejuni RM1221,; Putative lipoprotein

125, 45/120 (37%) (2e-12)


CPT_0105

202

Campylobacter curvus 525.92.; hypothetical protein CCV52592_0059

189, 109/200 (54%) (1e-51)


CPT_0123

143

Helicobacter hepaticus ATCC 51449.; Starvation-inducible DNA-binding protein Dps

156, 42/140 (30%) (4e-12)


CPT_0127

205

Campylobacter lari RM2100.; Hypothetical protein CLA1217

211, 66/109 (60%) (2e-32)


CPT_0137

306

Wolinella succinogenes DSM 1740.; Molybdenum cofactor biosynthesis protein A

321, 33/98 (33%) (0.002)


CPT_0145

80

Helicobacter pylori.; Putative transposase OrfA

210, 31/69 (44%) (3e-09)


CPT_0158

182

Campylobacter upsaliensis RM3195.; Thymidine kinase

167, 54/170 (31%) (3e-15)


CPT_0164

181

Campylobacter fetus subsp. fetus 82-40.; Polysaccharide deacetylase

305, 40/151 (26%) (0.006)


CPT_0165

212

Campylobacter fetus subsp. fetus 82-40.; FAD-dependent thymidylate synthase

206, 113/200 (56%) (4e-52)


CPT_0172

955

Campylobacter jejuni RM1221.; Hypothetical protein CJE0595

426, 71/176 (40%) (3e-32)


CPT_0191

171

Helicobacter hepaticus ATCC 51449.; Hypothetical protein HH0767

188, 61/187 (32%) (6e-15)


a Length refers to the number of amino-acid residues in the CDS and are calculated from the genomic sequence

b Gene product and putative function

c Identity and E values are from NCBI BLAST results, performed on 5th January 2009

Timms et al. BMC Genomics 2010 11:214   doi:10.1186/1471-2164-11-214

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