Research article
Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics
-
* Corresponding author: Koh Aoki kaoki@kazusa.or.jp
- † Equal contributors
1 Kazusa DNA Research Institute, 2-6-7 Kazusa-Kamatari, Kisarazu, 292-0818, Japan
2 Meiji University, 1-1-1 Higashi-mita, Tama-ku, Kawasaki, 214-8571, Japan
3 Chiba Prefectural Agriculture and Forestry Research Center, 808 Daizenno-cho, Midori-ku, Chiba, 266-0006, Japan
4 National Institute of Genetics, Yata 1111, Mishima, 411-8540, Japan
5 Tohoku University, 1-1 Amamiya-machi, Tsutsumidori, Aoba-ku, Sendai, 981-8555, Japan
6 The University of Tokyo, Komaba, Meguro-ku, 153-8902, Japan
7 Tottori University, 4-101 Koyama-minami, Tottori, 680-8553, Japan
8 Okayama University, 1-1-1 Tsushima-naka, Kita-ku, Okayama, 700-8530, Japan
9 Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, 183-8509, Japan
10 Institute of Biological Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8571, Japan
11 Gene Research Center, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8571, Japan
BMC Genomics 2010, 11:210 doi:10.1186/1471-2164-11-210
Published: 30 March 2010Additional files
Additional file 1:
Tom tissues used for RNA preparation. Detailed description of Micro-Tom tissues used for RNA preparation including tissue positions, treatments, and age of plants when tissues were harvested.
Format: DOC Size: 140KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional file 2:
Clone number list. Lists of clone numbers of nrFLcDNAs-sets appeared in the text
Format: XLS Size: 2.1MB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 3:
cDNA deived from non-coding RNA. Clone numbers and annotations of nrFLcDNAs that matched to non-coding RNAs registered in NONCODE database.
Format: DOC Size: 27KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional file 4:
Predicted CDS of 11,597 non-redundant HTCs. A list of amino acid sequences predicted for 11,597 non-redundant HTCs and results of BLASTP search against protein datasets of nr and tomato SBM database http://www.kazusa.or.jp/tomato/ webcite.
Format: XLS Size: 8.2MB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 5:
Datasets used for comparative analysis with other plants. Name and version of protein- and tentative consensus-datasets used for comparison of nrFLcDNAs with gene of other plants.
Format: DOC Size: 39KB Download file
This file can be viewed with: Microsoft Word Viewer