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Table 5
*The cytosolic proteome of H. mustelae* determined by LC-MS**
Rank^a	Locus	Annotation	Mw Da	MOWSE Score^b	Coverage^c%	emPAI^d	Mol%

1	HMU14210	fldA flavodoxin 1	18,147	620	56	6.74	7.35
2	HMU05200	thiJ 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein	20,365	212	32	3.64	3.97
3	HMU01210	tpx probable thiol peroxidase	17,993	886	62	3.43	3.75
4	HMU12840	aroQ 3-dehydroquinate dehydratase	17,477	161	21	2.98	3.25
5	HMU12860	sodB superoxide dismutase (Fe)	24,576	534	45	2.41	2.63
6	HMU00320	undefined product	8,942	162	54	2.16	2.36
7	HMU05470	acpP acyl carrier protein	8,469	139	48	2.16	2.36
8	HMU03120	tuf elongation factor TU	43,570	1695	62	2.09	2.28
9	HMU12690	possible bacterioferritin	17,198	562	46	1.99	2.17
10	HMU09770	trxA thioredoxin	11,553	361	36	1.89	2.06
11	HMU04180	hypothetical protein Cj1613c	30,321	755	29	1.71	1.87
12	HMU03320	ahpC alkyl hydroperoxide reductase	22,088	572	44	1.68	1.83
13	HMU14370	cft ferritin	19,056	276	45	1.42	1.55
14	HMU00950	rpsA 30S ribosomal protein S1	60,196	208	7	1.31	1.43
15	HMU10800	lpsJ succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B	23,051	501	38	1.15	1.26
16	HMU04000	groEL 60 kD chaperonin (cpn60)	57,443	1474	48	1.02	1.11
17	HMU03150	rplK 50S ribosomal protein L11	12,586	473	48	0.90	0.99
18	HMU01260	ald alanine dehydrogenase	39,844	662	32	0.82	0.9
19	HMU07380	hupB DNA-binding protein HU homolog	10,122	352	56	0.81	0.89
20	HMU10120	peb4[1]f2 major antigenic peptide PEB3ll binding factor 2	31,816	750	39	0.77	0.85
21	HMU07050	rplI 50S ribosomal protein L9	16,251	460	49	0.74	0.81
22	HMU04730	oorB OORB subunit of 2-oxoglutarate:acceptor oxidoreductase	30,613	423	28	0.74	0.81
23	HMU14090	putative thioredoxin	11,796	267	39	0.730	0.8
24	HMU04740	oorA OORA subunit of 2-oxoglutarate:acceptor oxidoreductase	40,773	554	36	0.70	0.77
25	HMU02170	cheY chemotaxis regulatory protein	13,894	208	25	0.70	0.76
26	HMU11060	putative putative aminotransferase (nifS protein homolog)	43,365	424	26	0.66	0.73
27	HMU00290	fbp putative putative fructose-1,6-bisphosphatase	30,550	323	20	0.66	0.73
28	HMU03180	rplL 50S ribosomal protein L7/L12	12,946	259	44	0.66	0.73
29	HMU00100	putative putative acyl-CoA thioester hydrolase	16,960	168	20	0.63	0.7
30	HMU13330	undefined product	8,555	166	49	0.63	0.7
31	HMU03850	flaG possible flagellar protein	14,814	452	34	0.62	0.69
32	HMU03060	ureB urease alpha subunit	61,146	743	26	0.62	0.68
33	HMU09760	trxB thioredoxin reductase	33,972	587	35	0.62	0.68
34	HMU07390	ndk nucleoside diphosphate kinase	15,293	291	25	0.61	0.67
35	HMU05040	putative hydantoin utilization protein B	83,272	948	28	0.60	0.66
36	HMU10790	scoA succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A	25,076	305	32	0.58	0.64
37	HMU03990	groES 10 kD chaperonin (cpn10)	10,185	129	34	0.58	0.64
38	HMU13450	hypothetical protein Cj0706	27,047	694	49	0.55	0.61
39	HMU10960	katA catalase	52,490	781	39	0.53	0.59
40	HMU03670	aspA aspartate ammonia-lyase	51,394	620	31	0.51	0.57
41	HMU10290	rpoA DNA-directed RNA polymerase alpha chain	37,551	308	25	0.50	0.55
42	HMU11440	putative putative nucleotide phosphoribosyltransferase	17,378	164	25	0.50	0.55
43	HMU10630	putative putative periplasmic protein	21,100	282	24	0.48	0.53
44	HMU05030	putative putative hydantoinase A	78,444	681	24	0.47	0.52
45	HMU11200	glyA serine hydroxymethyltransferase	45,885	461	24	0.48	0.52
46	HMU08860	hypB hydrogenase isoenzymes formation protein	26,838	328	28	0.46	0.51
47	HMU01430	putative putative periplasmic cytochrome C	10,944	178	36	0.46	0.51
48	HMU06880	yabJ putative putative regulatory protein	13,506	163	26	0.46	0.51
49	HMU09820	surE SurE protein homolog	28,918	352	25	0.44	0.49
50	HMU12070	putative putative exported protein	16,551	270	33	0.44	0.49

The 50 most abundant proteins are tabulated. a. Relative abundance ranked by mol% b. Score for the entire protein derived by MASCOT, and made up of the individual scores given to each peptide sequence c. Proportion of each protein sequence identified d. Exponentially modified protein abundance index. See Methods for details and reference.
O'Toole et al. BMC Genomics 2010 11:164 doi:10.1186/1471-2164-11-164

Table 5