Table 5

KLF9 uAUGs predicted to interact with miRNAs in HeLa cells

uAUG^§

miRNAs predicted to interact^†

Evidence of miRNA expression^‡

HeLa

N2A

1

cauaAUGgggu

hsa-miR-583 (3')

Yes[42]

---

hsa-miR-490-3p (3')

---

---

mmu-miR-490 (3')

---

---

2

aaagAUGuguc

miR-380 (3')

Yes[42]

---

hsa-miR-576-5p (3')

Yes[42]

---

3

gccaAUGccag

miR-16 (3')

Yes[41,42]

Yes[41,43]

hsa-miR-31 (3')

Yes[41,42]

---

miR-324-5p (3')

Yes[41,42]

---

4

aaagAUGuguc

miR-380 (3')

Yes[42]

---

hsa-miR-576-5p (3')

Yes[42]

---

5

uuaaAUGucag

None

---

---

6

cgugAUGggau

miR-448 (3')

---

---

hsa-miR-583 (3')

Yes[42]

---

hsa-miR-609 (3')

Yes[42]

---

miR-654-3p (3')

---

---

hsa-miR-605 (5')

---

---

mmu-miR-325 (3')

---

---

m6

cgugAAGggau

hsa-miR-491-3p (3')

---

---

miR-188-5p (5')

Yes[42]

---

hsa-miR-211 (3')

---

---

hsa-miR-520 h (3')

---

---

mmu-miR-712 (5')

---

---

mmu-miR-343 (5')

---

---

7

gagaAUGccgg

hsa-miR-31 (3')

Yes[41,42]

---

m7

gagaAAGccgg

mmu-miR-505 (3')

---

---

8

gugaAUGuccu

None

---

---

9

guggAUGcugc

hsa-miR-450b-3p (3')

---

---

miR-487b (3')

---

Yes[43]

miR-103 (5')

Yes[42]

Yes[43]

miR-107 (5')

Yes[42]

Yes[43]

miR-338-3p (5')

Yes[41,42]

---

mmu-miR-376b (3')

---

Yes[43]

mmu-miR-450a-3p (3')

---

---

10

aaagAUGaggg

hsa-miR-556-3p (3'),

---

---

hsa-miR-609 (3')

Yes[42]

---

^§ uAUG shown in caps, mutated sequences prefixed with letter 'm', and mutated positions shown in bold.

^† Three letter species codes (hsa/mmu) are indicated only when one sequence interacts and omitted if both interact. Numbers in parentheses indicate the miRNA end predicted to interact. miRNAs in italics indicate matches with one GU wobble.

^‡ Reference for evidence of expression.

Ajay et al. BMC Genomics 2010 11:155   doi:10.1186/1471-2164-11-155