Table 4

uAUGs from members of the KLF family predicted to interact with conserved miRNAs

KLF Gene§

uAUG

miRNAs predicted to interact


KLF6

(NM_001300)

uugcAUGaaac

hsa-miR-93 (3')


KLF7

(NM_003709)

cuggAUGccuc

hsa-miR-450b-3p (3'), hsa-miR-487a (3')

cuggAUGucug

hsa-miR-450b-3p (3'), hsa-miR-487a (3')


KLF8

(NM_007250)

cucuAUGauuc

hsa-miR-376a (5'), hsa-miR-376b (5'),

hsa-miR-376c (5')

cuuuAUGuuca

None

gaggAUGggug

hsa-miR-331-3p (3'), hsa-miR-363 (3'),

hsa-miR-802 (3'), hsa-miR-99b (5')

uuggAUGcuug

hsa-miR-450b-3p (3')

cgcuAUGucag

hsa-miR-31 (3')

cagaAUGgggc

hsa-miR-448 (3'), hsa-miR-583 (3')

hsa-miR-136 (5')

gaguAUGagcc

hsa-miR-767-3p (5')

cggcAUGaguu

hsa-miR-574-3p (5')


KLF10

(NM_001032282, isoform a)

gauuAUGcaau

hsa-let-7d (3'), hsa-miR-153 (5')

agcaAUGgcuc

hsa-miR-160 (5')

caucAUGcauu

None

aagaAUGuuuu

None

uuuaAUGgaaa

None


KLF12

(NM_007249)

aucaAUGugac

hsa-miR-199a-3p (3')

hsa-miR-23a (5')

hsa-miR-23b (5')

acaaAUGgaug

hsa-miR-136 (5')

auggAUGaaug

hsa-miR-450b-3p (3')

hsa-miR-487b (3')

hsa-miR-802 (3')

augaAUGaaua

None


§ KLF13 and KLF9 are presented along with miRNA expression data in Table 3 and 5, respectively.

uAUGs are shown in caps.

Numbers in parentheses indicate the miRNA end predicted to interact. miRNAs in italics indicate matches with one GU wobble.

Ajay et al. BMC Genomics 2010 11:155   doi:10.1186/1471-2164-11-155

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