Table 1

MicroRNAs predicted to interact with uAUG-containing motifs

miRNA*

uAUG-containing motifs§


hsa-let-7d

AACUAUG, ACUAUGCAA, CUAUGCAAC


hsa-miR-130a/b

AUGCCCU


hsa-miR-132

GACCAUGGCU


hsa-miR-146a

ACCCAUGG, CCCAUGGAA


hsa-miR-146b-5p

GCCUAUGG, CCUAUGGAA


hsa-miR-194

CCACAUGGA, ACAUGGAG


hsa-miR-199a-3p

ACCAAUGUG


hsa-miR-202

UCCCAUGC, CCCAUGCC


hsa-miR-219-2-3p

ACAGAUGU, CAGAUGUCC, AGAUGUCCA


hsa-miR-297

GCACAUGC


hsa-miR-299-5p

AUGUAUGUGGG


hsa-miR-31

GCUAUGCCA, CUAUGCCAG


hsa-miR-324-5p

ACCAAUGCC, CAAUGCCC


hsa-miR-33a/b

GCAAUGCA, CAAUGCAA, AUGCAAC


hsa-miR-34b

AUGGCAG


hsa-miR-363

ACAGAUGGA, AGAUGGAU, CAGAUGGAU, GAUGGAU


hsa-miR-376b

AACAUGGAUU


hsa-miR-380

AAGAUGUGG, AGAUGUGGA, GAUGUGGA


hsa-miR-431

GCAUGACG, CAUGACGG


hsa-miR-432

CCCAAUGA, CCAAUGAC


hsa-miR-448

AUGGGAC


hsa-miR-450b-3p

AUGGAUGCA, GGAUGCAA


hsa-miR-455-3p

GUAUAUGC, AUAUGCC


hsa-miR-455-5p

CGAUGUAG, GAUGUAGU


hsa-miR-487a

CUGGAUGUC


hsa-miR-487b

GUGGAUGA, UGGAUGAC


hsa-miR-490-3p

CAGCAUGGAG, AGCAUGGAGU


hsa-miR-491-5p

CCUCAUGGAAG


hsa-miR-513b

AUAAAUGACA, AUGACAC


hsa-miR-556-3p

AAAGAUGAGC, AGAUGAGCU


hsa-miR-562

GCAAAUGGU


hsa-miR-580

CCUAAUGA, AUGAUUC


hsa-miR-583

UAAUGGGA, AAUGGGAC


hsa-miR-598

GACGAUGAC, ACGAUGACA


hsa-miR-609

AGAGAUGAG, GAGAUGAGA


hsa-miR-654-3p

GGUGAUGGU


hsa-miR-654-5p

GCACAUG, ACAUGUUCU


hsa-miR-767-3p

AACCAUGGG


hsa-miR-802

AAGGAUGAAU


hsa-miR-887

CGGGAUGG


hsa-miR-889

AAUGGUUG


hsa-miR-890

ACUGAUGC, CUGAUGCC


hsa-miR-942

CACAUGGCC, ACAUGGCCA


hsa-miR-944

UCCGAUG


* The 46 miRNAs represent conserved miRNAs

§Only the portion of uAUG11-mer that interacts with the 3'-end of miRNAs without a GU wobble is presented. If a miRNA matches a uAUG sequence and its subsequence(s), only the longest form is presented.

Ajay et al. BMC Genomics 2010 11:155   doi:10.1186/1471-2164-11-155

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