Table 3

The twelve largest clusters of TFBS formed after QT-clust analysis

QTCluster_1

QTCluster_2

QTCluster_3

QTCluster_4

QTCluster_5

QTCluster_6


NKX62

USF

GC

CKROX

CREB

LMO2COM

OG2

CLOCKBMAL

ETF

SPZ1

ATF

AREB6

FOXO4

HIF1

AP2GAMMA

WT1

CREBP1CJUN

E47

FOXO1

NMYC

MOVOB

MZF1

ATF4

E2A

BCL6

ARNT

AP2

MAZ

ATF3

MYOD

SOX10

USF2

LRF

TFIII

CREBP1

E12

STAT5A

MYCMAX

CHCH

IK

S8

MAX

SP1

SRY

MYC

AP2ALPHA

PAX2

EBOX

STAT4

CDXA

TBP

QTCluster_7

QTCluster_8

QTCluster_9

QTCluster_10

QTCluster_11

QTCluster_12

HNF3ALPHA

GATA

LBP1

AML

HELIOSA

CETS1P54

FOXJ2

GATA6

AP4

COREBINDINGFACTOR

ETS

SAP1A

FOXO3A

GATA3

TAL1

PEBP

IK1

ELK1

HNF3B

GATA2

MYOGENIN

OSF2

STAT3

NRF2

HFH3

GATA1

HEB

AML1

HNF3

RUSH1A


Veerla et al. BMC Genomics 2010 11:145   doi:10.1186/1471-2164-11-145

Open Data