Table 3

The ten most frequent domains among the unmapped BESs of O. rufipogon.

InterPro ID

Description

Mapped

Unmapped

p value

No. of genes with the domain

No. of genes without the domain

No. of genes with the domain

No. of genes without the domain


IPR000719

Protein kinase, core

731

4075

26

109

0.22

IPR001611

Leucine-rich repeat

441

4365

47

88

1.10 × 10-5

IPR001878

Zinc finger, CCHC-type

138

4668

12

123

7.30 × 10-5

IPR002182

NB-ARC

345

4461

37

98

2.61 × 10-12

IPR007527

Zinc finger, SWIM-type

63

4743

8

127

9.95 × 10-4

IPR008271

Serine/threonine protein kinase, active site

569

4237

22

113

0.14

IPR011009

Protein kinase-like

755

4051

29

106

0.07

IPR013210

Leucine-rich repeat, N-terminal

222

4584

21

114

1.93 × 10-6

IPR017441

Protein kinase ATP binding, conserved site

540

4266

21

114

0.13

IPR017442

Serine/threonine protein kinase-related

628

4178

24

111

0.12


For each domain, the numbers of genes with or without the domain are listed for mapped and unmapped BESs. P values were calculated by using Fisher's exact test.

Sakai and Itoh BMC Genomics 2010 11:121   doi:10.1186/1471-2164-11-121

Open Data