Table 3 |
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|
The ten most frequent domains among the unmapped BESs of O. rufipogon. |
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|
InterPro ID |
Description |
Mapped |
Unmapped |
p value |
||
|
No. of genes with the domain |
No. of genes without the domain |
No. of genes with the domain |
No. of genes without the domain |
|||
|
|
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|
IPR000719 |
Protein kinase, core |
731 |
4075 |
26 |
109 |
0.22 |
|
IPR001611 |
Leucine-rich repeat |
441 |
4365 |
47 |
88 |
1.10 × 10-5 |
|
IPR001878 |
Zinc finger, CCHC-type |
138 |
4668 |
12 |
123 |
7.30 × 10-5 |
|
IPR002182 |
NB-ARC |
345 |
4461 |
37 |
98 |
2.61 × 10-12 |
|
IPR007527 |
Zinc finger, SWIM-type |
63 |
4743 |
8 |
127 |
9.95 × 10-4 |
|
IPR008271 |
Serine/threonine protein kinase, active site |
569 |
4237 |
22 |
113 |
0.14 |
|
IPR011009 |
Protein kinase-like |
755 |
4051 |
29 |
106 |
0.07 |
|
IPR013210 |
Leucine-rich repeat, N-terminal |
222 |
4584 |
21 |
114 |
1.93 × 10-6 |
|
IPR017441 |
Protein kinase ATP binding, conserved site |
540 |
4266 |
21 |
114 |
0.13 |
|
IPR017442 |
Serine/threonine protein kinase-related |
628 |
4178 |
24 |
111 |
0.12 |
|
|
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|
For each domain, the numbers of genes with or without the domain are listed for mapped and unmapped BESs. P values were calculated by using Fisher's exact test. |
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|
Sakai and Itoh BMC Genomics 2010 11:121 doi:10.1186/1471-2164-11-121 |
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