Table 3

Top 20 Annotated Transcripts Upregulated in Light-induced Plasmodia

Contig ID

SwissProt

Annotation

hits(D)

hits(L)

relL/relD

P-value


PpolyN1d39e07

O08623

Sequestosome-1, SQSTM1

3

171

71.6971

2.03E-56


contig02685_1

Q54IV3

ATP-dependent RNA helicase, DDX42

1

37

46.8103

7.87E-13


PpolyN1d106 h10

Q9U1K1

Spire

23

813

44.5504

5.40E-250


PpolyN1a08 g07

O08849

Regulator of G-protein signaling 2, RGS2

1

22

27.8276

9.99E-08


contig05590_1

Q8H100

ADP-ribosylation factor GTPase-activating, AGD8

1

21

26.5690

2.17E-07


PpolyN1a14d12

Q07283

Trichohyalin, TRHY

1

20

25.2931

4.69E-07


contig11781_1

Q55D99

Serine/threonine-protein kinase, pakA

2

34

21.5086

8.84E-11


contig06420_1

Q9UUG5

Myosin regulatory light chain 1, MLR1

1

17

21.5000

4.69E-06


contig08470_1

Q54MI7

Uncharacterized protein DDB_G0285917

1

16

20.2414

1.01E-05


contig12553_1

Q5R826

Transmembrane protein 63A, TM63A

20

308

19.4149

1.89E-83


PpolyN1d18d06

Q05924

Dosage-dependent cell cycle regulator 2, DCR2

1

15

18.9828

2.15E-05


contig08799_1

Q43207

Rotamase, FKBP70

1

14

17.7069

4.59E-05


contig12445_1

Q7S045

Non-histone chromosomal protein 6, NHP6

1

13

16.4483

9.76E-05


contig11110_1

P54678

Calcium-transporting ATPase, PAT1

1

13

16.4483

9.76E-05


contig08929_1

Q39572

Ras-related YPTC6

1

13

16.4483

9.76E-05


contig08360_1

Q6TQE1

Zinc finger- containing protein 18, NHN1

1

12

15.1724

2.06E-04


contig04102_1

Q9D0C1

Rab RING finger 7, RR7

4

47

14.8026

2.86E-13


contig03233_1

P06704

Cell division control protein 31, CDC31

2

23

14.5517

3.44E-07


contig02500_1

Q5UPW6

Putative FNIP repeat-containing protein, L281

2

23

14.5517

3.44E-07


contig08917_1

Q9PTW9

Proteasome subunit alpha type-7, PSMA7

1

11

13.9138

4.35E-04


A list of transcripts with unambiguous annotations, significant differential expression (P < 0.05) with the highest levels of upregulation (relL/relD > 1.0), is shown. Annotations, SwissProt accessions, hit counts, and probability values follow the same convention as in Table 2.

Barrantes et al. BMC Genomics 2010 11:115   doi:10.1186/1471-2164-11-115

Open Data