Table 3

The 20 most abundant ESTs isolated from leaf cDNA library of O. affinis

Contig ID

No. ESTs

Putative function

AGI number


Oa113

21

30S ribosomal protein

AT5G24490

Oa126

18

RuBisCO activase

AT2G39730

Oa018

14

undiscovered sequence

AT3G21200

Oa122

14

mitochondrial carnitine Acyl carrier-like protein

AT5G46800

Oa008

13

kalata B2 precursor (Oak4)

Oa014

13

CAAX protease

AT4G01320

Oa131

13

acidic endochitinase (CHIB1)

AT5G24090

Oa031

12

light-dependent NADPH:protochlorophyllide oxidoreductase B

AT4G27440

Oa054

12

fructose-bisphosphate aldolase

AT4G38970

Oa066

12

galacturonosyltransferase

AT5G54690

Oa185

12

glyceraldehyde-3-phosphate dehydrogenase

AT1G13440

Oa064

11

kalata B1 precursor (Oak1)

Oa071

11

S-adenosylmethionine synthetase 3

AT2G36880

Oa081

11

co-chaperone grpE family protein

AT1G36390

Oa090

11

protein binding

AT1G22970

Oa188

11

asparaginase

AT3G16150

Oa134

10

ankyrin repeat family protein

AT2G01680

Oa115

9

ribosomal protein L1 family protein

AT3G63490

Oa022

8

phosphoribulokinase

AT1G32060

Oa186

8

glyceraldehyde-3-phosphate dehydrogenase

AT1G12900


*The cyclotides precursors are highlighted.

Qin et al. BMC Genomics 2010 11:111   doi:10.1186/1471-2164-11-111

Open Data