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Open Access Highly Accessed Research article

Distinct, ecotype-specific genome and proteome signatures in the marine cyanobacteria Prochlorococcus

Sandip Paul1, Anirban Dutta1, Sumit K Bag23, Sabyasachi Das24 and Chitra Dutta12*

Author Affiliations

1 Structural Biology & Bioinformatics Division, Indian Institute of Chemical Biology, 4, Raja S. C. Mullick Road, Kolkata - 700 032, India

2 Bioinformatics Centre, Indian Institute of Chemical Biology, 4, Raja S. C. Mullick Road, Kolkata - 700 032, India

3 Present address: Plant Molecular Biology & Genetic Engineering Division, National Botanical Research Institute, Rana Pratap Marg, Lucknow - 226001, India

4 Present address: Department of Pathology and Laboratory Medicine, Emory Vaccine Center, School of Medicine, Emory University, Atlanta, GA 30322, USA

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BMC Genomics 2010, 11:103  doi:10.1186/1471-2164-11-103

Published: 10 February 2010

Additional files

Additional file 1:

Relative Synonymous Codon Usage of leading and lagging strand genes of P. marinus str. MIT9313 (LL1).

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Additional file 2:

Relative Synonymous Codon Usage of leading and lagging strand genes of P. marinus str. NATL2A (LL6).

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Additional file 3:

Dinucleotide abundance values of twelve P. marinus genomes and E. coli.

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Additional file 4:

Average G+C-contents (%) of the overall genome, coding sequences and intergenic sequences of 12 Prochlorococcus strains.

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Additional file 5:

List of putative remnants of coding regions in LL6 and HL3.

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Additional file 6:

Predicted locations of origins and termini of replication of the 12 Prochlorococcus strains.

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Open Data